Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 203284218

GI number: 203284218

Start: 319848

End: 320792

Strand: Reverse

Name: smf [H]

Synonym: BDU_300

Alternate gene names: 203284218

Gene position: 320792-319848 (Counterclockwise)

Preceding gene: 203284219

Following gene: 203284217

Centisome position: 34.43

GC content: 30.16

Gene sequence:

>945_bases
ATGTGCAAATTACTTTATGTTGATAATTTAAAATTTTTAAAGAGCAAAGAAAAGCTTAGGATTTTTAATAATTTTGATTT
CAATGAACTTTGTAAATTAAGTTTAAGAGATATTTCTAGTTATTTATCTAGAGATTTTAAAAAAATCCATAAGCTTCCAG
ACCTAAAATTAATAGAGTTGCAACAAAAAATTATTAATAAGACGGGTACAAAGGTTGTAGTTCTTGGGTCTAAAGATTAT
CCTTTCAAATTAGAGAGAATCTATGATCCTCCATTTGTCATTTATTATAAAGGGAATCTTCCAGATTCTAATTCTGTATC
TTGGGCTGTTGTTGGGTCAAGACAGATTAGTACTTTTTTGGCAAATAAAATTAAAGAGTTGTCATCTCATCTTGCTAGGA
ATAATATCGAGATAATATCTGGATTTGCAGTAGGTGCTGATATTGCGGCTCATATTGGTGCACTTATTGAAAAAAAGAGG
ACATATGCAGTTATTGCGACAGATATTGATAATATTTATCCAAAGCAAAATAGAAAATATGTTGCTCGTCTTTTAGAAAA
TGGTGGAGGTATTCTGACTGAGACTTTGCCTTATGAGAAGATACAAAATTATTTTTTTGCAAAAAGAAATAGGATAGTGG
CTGGTCTTGCAAATGCTGTTTTTGTTACTTGTGCACCAAAAAAGTCAGGTGCTTTAATTACTGCTGAACTTGGACTTGAT
GTTGGTCTTGATGTTTATGTTTATGATGTTAATTATTCTGGTGATGGTTCTAGGGATTTATATGATTCTGGAGCCTTAGA
AATAAAATCAGTACCAGATCTTTATAAGGTTTTAAATGTTGAGTATAATAAGCTTGAAATTGTTGATGATATGGATAGTT
GTTGTATAGGTGGAGATATATCTAGTATGCTTATTAGTGAGTTATTGAATGAAATATCTAAATAG

Upstream 100 bases:

>100_bases
ATAATGCTTTATTATTTTATAATAAAGCAAAAAGTAAGGCTTCAACTCAAGAACAGATAGAGGGAGTTAGTAAAATAATA
AATGATTTTAAGTAGTTTTT

Downstream 100 bases:

>100_bases
GGAGGGGACGTCGTGAATTTTAAAGGAACCACAGTTATTGCAATAAGAAGGGCAGGAAAGACTGTAGTAGCAGCAGATGG
GCAGGTGACTTTTGGATATA

Product: smf protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MCKLLYVDNLKFLKSKEKLRIFNNFDFNELCKLSLRDISSYLSRDFKKIHKLPDLKLIELQQKIINKTGTKVVVLGSKDY
PFKLERIYDPPFVIYYKGNLPDSNSVSWAVVGSRQISTFLANKIKELSSHLARNNIEIISGFAVGADIAAHIGALIEKKR
TYAVIATDIDNIYPKQNRKYVARLLENGGGILTETLPYEKIQNYFFAKRNRIVAGLANAVFVTCAPKKSGALITAELGLD
VGLDVYVYDVNYSGDGSRDLYDSGALEIKSVPDLYKVLNVEYNKLEIVDDMDSCCIGGDISSMLISELLNEISK

Sequences:

>Translated_314_residues
MCKLLYVDNLKFLKSKEKLRIFNNFDFNELCKLSLRDISSYLSRDFKKIHKLPDLKLIELQQKIINKTGTKVVVLGSKDY
PFKLERIYDPPFVIYYKGNLPDSNSVSWAVVGSRQISTFLANKIKELSSHLARNNIEIISGFAVGADIAAHIGALIEKKR
TYAVIATDIDNIYPKQNRKYVARLLENGGGILTETLPYEKIQNYFFAKRNRIVAGLANAVFVTCAPKKSGALITAELGLD
VGLDVYVYDVNYSGDGSRDLYDSGALEIKSVPDLYKVLNVEYNKLEIVDDMDSCCIGGDISSMLISELLNEISK
>Mature_314_residues
MCKLLYVDNLKFLKSKEKLRIFNNFDFNELCKLSLRDISSYLSRDFKKIHKLPDLKLIELQQKIINKTGTKVVVLGSKDY
PFKLERIYDPPFVIYYKGNLPDSNSVSWAVVGSRQISTFLANKIKELSSHLARNNIEIISGFAVGADIAAHIGALIEKKR
TYAVIATDIDNIYPKQNRKYVARLLENGGGILTETLPYEKIQNYFFAKRNRIVAGLANAVFVTCAPKKSGALITAELGLD
VGLDVYVYDVNYSGDGSRDLYDSGALEIKSVPDLYKVLNVEYNKLEIVDDMDSCCIGGDISSMLISELLNEISK

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=237, Percent_Identity=30.8016877637131, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 35263; Mature: 35263

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCKLLYVDNLKFLKSKEKLRIFNNFDFNELCKLSLRDISSYLSRDFKKIHKLPDLKLIEL
CEEEEEECCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QQKIINKTGTKVVVLGSKDYPFKLERIYDPPFVIYYKGNLPDSNSVSWAVVGSRQISTFL
HHHHHCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCHHHHHHH
ANKIKELSSHLARNNIEIISGFAVGADIAAHIGALIEKKRTYAVIATDIDNIYPKQNRKY
HHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
VARLLENGGGILTETLPYEKIQNYFFAKRNRIVAGLANAVFVTCAPKKSGALITAELGLD
HHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHEEEECCEEEEEECCCCCCCEEEEECCCC
VGLDVYVYDVNYSGDGSRDLYDSGALEIKSVPDLYKVLNVEYNKLEIVDDMDSCCIGGDI
CCCEEEEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHCCCCCEEEEECCCCCCEECCCH
SSMLISELLNEISK
HHHHHHHHHHHHCC
>Mature Secondary Structure
MCKLLYVDNLKFLKSKEKLRIFNNFDFNELCKLSLRDISSYLSRDFKKIHKLPDLKLIEL
CEEEEEECCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QQKIINKTGTKVVVLGSKDYPFKLERIYDPPFVIYYKGNLPDSNSVSWAVVGSRQISTFL
HHHHHCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCHHHHHHH
ANKIKELSSHLARNNIEIISGFAVGADIAAHIGALIEKKRTYAVIATDIDNIYPKQNRKY
HHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
VARLLENGGGILTETLPYEKIQNYFFAKRNRIVAGLANAVFVTCAPKKSGALITAELGLD
HHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHEEEECCEEEEEECCCCCCCEEEEECCCC
VGLDVYVYDVNYSGDGSRDLYDSGALEIKSVPDLYKVLNVEYNKLEIVDDMDSCCIGGDI
CCCEEEEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHCCCCCEEEEECCCCCCEECCCH
SSMLISELLNEISK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]