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The map label for this gene is sodA [H]

Identifier: 203284076

GI number: 203284076

Start: 164786

End: 165397

Strand: Reverse

Name: sodA [H]

Synonym: BDU_154

Alternate gene names: 203284076

Gene position: 165397-164786 (Counterclockwise)

Preceding gene: 203284077

Following gene: 203284073

Centisome position: 17.75

GC content: 28.43

Gene sequence:

>612_bases
ATGTTTAAATTACCAGAACTTGGCTATTCTTATGATGCTTTGGAGCCTTATATTGATGCTAAGACAATGGAAATTCATCA
TAGTAAGCATCATAATGCTTATACAGTAAATTTAAATTCTGTACTTGAAAAGACAAAAGTAAATTGTTCTTATGATATTG
AAAGTATATTAAAAAATATTCAGCGATTTCCAATTGAATTTCAAAAAGTTGTTAAAAATAATGCAGGTGGATATGCTAAT
CATAATTTATATTTTAGAACTTTAAAACCTGGCAATAAAGATAATATTTTGAAAAATTTTGAAGAGCATGTAAATGCTAC
TTTTAGTAGTCTTGATAATTTGAAGGTGGCCTTAAAAGATTTAGCTGTTAGTATTTTTGGAAGTGGTTGGGCTTGGTTGG
TTCTTTATGCAAATAGGGAGCTGCAAGTAATATCAAGACCAAATCAAGATAGTCCTTTGATGGAGGATTATAAGCCAATT
TTAGGTATTGATGTTTGGGAACATGCTTATTATCTTAAATATCAAAATAGAAGGGCTGAATATATTGATGCGTTTTTTAA
GACATTAAATTGGGAAGAAATTTCGCGAATTTATAATGAAATCATAGAATAA

Upstream 100 bases:

>100_bases
TAGAAATACTCCCAAGATTGGAAGAAATGAACCTTGTTATTGTGGAAGTAAAAAAAAATATAAAAATTGTCATGGAAAAA
ATTAAAAAGGGGGTGTTGTT

Downstream 100 bases:

>100_bases
TTATAATTTTAATAGGTAAATATTTTTATTTGTTTCAAAACTAGGATTAAATATAAATATGTATAGTGTGTTCCTCTTGT
CTAATATATGTCTATATTTA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MFKLPELGYSYDALEPYIDAKTMEIHHSKHHNAYTVNLNSVLEKTKVNCSYDIESILKNIQRFPIEFQKVVKNNAGGYAN
HNLYFRTLKPGNKDNILKNFEEHVNATFSSLDNLKVALKDLAVSIFGSGWAWLVLYANRELQVISRPNQDSPLMEDYKPI
LGIDVWEHAYYLKYQNRRAEYIDAFFKTLNWEEISRIYNEIIE

Sequences:

>Translated_203_residues
MFKLPELGYSYDALEPYIDAKTMEIHHSKHHNAYTVNLNSVLEKTKVNCSYDIESILKNIQRFPIEFQKVVKNNAGGYAN
HNLYFRTLKPGNKDNILKNFEEHVNATFSSLDNLKVALKDLAVSIFGSGWAWLVLYANRELQVISRPNQDSPLMEDYKPI
LGIDVWEHAYYLKYQNRRAEYIDAFFKTLNWEEISRIYNEIIE
>Mature_203_residues
MFKLPELGYSYDALEPYIDAKTMEIHHSKHHNAYTVNLNSVLEKTKVNCSYDIESILKNIQRFPIEFQKVVKNNAGGYAN
HNLYFRTLKPGNKDNILKNFEEHVNATFSSLDNLKVALKDLAVSIFGSGWAWLVLYANRELQVISRPNQDSPLMEDYKPI
LGIDVWEHAYYLKYQNRRAEYIDAFFKTLNWEEISRIYNEIIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=40.9090909090909, Blast_Score=150, Evalue=6e-37,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=40.9090909090909, Blast_Score=150, Evalue=6e-37,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=36.3636363636364, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=45, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=36.9230769230769, Blast_Score=146, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.0710659898477, Blast_Score=137, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=38.1909547738693, Blast_Score=130, Evalue=4e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=7e-29,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38, Blast_Score=136, Evalue=7e-33,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23817; Mature: 23817

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLPELGYSYDALEPYIDAKTMEIHHSKHHNAYTVNLNSVLEKTKVNCSYDIESILKNI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHH
QRFPIEFQKVVKNNAGGYANHNLYFRTLKPGNKDNILKNFEEHVNATFSSLDNLKVALKD
HHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVSIFGSGWAWLVLYANRELQVISRPNQDSPLMEDYKPILGIDVWEHAYYLKYQNRRAE
HHHHHHCCCEEEEEEEECCCEEEEECCCCCCCCHHHCCHHHCCHHHHHEEEEEECCCHHH
YIDAFFKTLNWEEISRIYNEIIE
HHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFKLPELGYSYDALEPYIDAKTMEIHHSKHHNAYTVNLNSVLEKTKVNCSYDIESILKNI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHH
QRFPIEFQKVVKNNAGGYANHNLYFRTLKPGNKDNILKNFEEHVNATFSSLDNLKVALKD
HHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVSIFGSGWAWLVLYANRELQVISRPNQDSPLMEDYKPILGIDVWEHAYYLKYQNRRAE
HHHHHHCCCEEEEEEEECCCEEEEECCCCCCCCHHHCCHHHCCHHHHHEEEEEECCCHHH
YIDAFFKTLNWEEISRIYNEIIE
HHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353077; 9403685 [H]