Click here to switch to the map view.

The map label for this gene is frr

Identifier: 203284046

GI number: 203284046

Start: 130013

End: 130567

Strand: Reverse

Name: frr

Synonym: BDU_124

Alternate gene names: 203284046

Gene position: 130567-130013 (Counterclockwise)

Preceding gene: 203284047

Following gene: 203284045

Centisome position: 14.01

GC content: 31.35

Gene sequence:

>555_bases
ATGGAGGAATATAAAGCTTTATTAGATGAAAAGATGGGAAGGGTTGTTTTATCTCTTGAGAGTGAATATAAGTCTTTAAG
AACCGGTAGAGTAAATAGCGCTCTTTTTGATAAAGTATTTGTTGATTATTATGGAGAAAAAACTCCTTTAACTAGGGTTG
CTAATATTAGTGTTCCTGAGGCAAGGCTTATTGTCATTCAGCCTTGGGATAGAAGTCTGTTATCTAAAATAGAACAGGCT
ATACTCAATTCAGATCTCTCAATGAATCCTTCAAGTGATGGATCAGTACTTAGGATTAAGGTGCCTGTTTTGACTATCGA
GAGACGAAAAGAAATAGTAAAACAAGCAAAGAAAATAGCTGAGGATCATAAAATTGCAACTAGAAATATAAGGCATGAAT
TAAATAATAAAGCAAAAAAGCAAGAAAAAGATTCTCAGATTACTGAGGATGATTTACGACGAATTTTAGATGATATTCAA
CGAGATACCAATTTTTATATTAAAAAAATAGATGGGATTTTTGATTTAAAAGCAAAAGAGATAATGGAAGTTTAA

Upstream 100 bases:

>100_bases
GTTTCTAAGTTGATTTTAAGTAAAATAGAGGTGGTGGAATTTAAGTATTTAAGTGTTGGATAATAATTTGTGATTCTTTT
GATTTTTTAAGGAGGTTTGA

Downstream 100 bases:

>100_bases
GTTTATGAGTAGTAATTCTCTTCCAAGTCATGTTGGGATCATTATGGATGGAAATAGGAGATGGGCATTAAAAAAAGGTT
TGTCATTTTTTGAAGGACAT

Product: ribosome recycling factor

Products: NA

Alternate protein names: RRF; Ribosome-releasing factor

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MEEYKALLDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQA
ILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQ
RDTNFYIKKIDGIFDLKAKEIMEV

Sequences:

>Translated_184_residues
MEEYKALLDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQA
ILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQ
RDTNFYIKKIDGIFDLKAKEIMEV
>Mature_184_residues
MEEYKALLDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQA
ILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQ
RDTNFYIKKIDGIFDLKAKEIMEV

Specific function: Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another

COG id: COG0233

COG function: function code J; Ribosome recycling factor

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RRF family

Homologues:

Organism=Escherichia coli, GI1786368, Length=173, Percent_Identity=40.4624277456647, Blast_Score=141, Evalue=2e-35,

Paralogues:

None

Copy number: 840 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): RRF_BORDL (B5RLJ5)

Other databases:

- EMBL:   CP000976
- RefSeq:   YP_002221786.1
- EnsemblBacteria:   EBBORT00000001587
- GeneID:   6918208
- GenomeReviews:   CP000976_GR
- KEGG:   bdu:BDU_124
- GeneTree:   EBGT00050000007456
- HOGENOM:   HBG533975
- OMA:   YYGAETP
- ProtClustDB:   PRK00083
- GO:   GO:0005737
- HAMAP:   MF_00040
- InterPro:   IPR002661
- InterPro:   IPR015998
- PANTHER:   PTHR20982
- PANTHER:   PTHR20982:SF3
- TIGRFAMs:   TIGR00496

Pfam domain/function: PF01765 RRF; SSF55194 Ribosome_recyc_fac

EC number: NA

Molecular weight: Translated: 21316; Mature: 21316

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEYKALLDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHEECCCCCC
ARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIA
EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEHHHHHHHHHHHHHHH
EDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIFDLKAKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHH
IMEV
HHCC
>Mature Secondary Structure
MEEYKALLDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHEECCCCCC
ARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIA
EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEHHHHHHHHHHHHHHH
EDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIFDLKAKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHH
IMEV
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA