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The map label for this gene is ybeY [C]

Identifier: 203283986

GI number: 203283986

Start: 67199

End: 67645

Strand: Reverse

Name: ybeY [C]

Synonym: BDU_64

Alternate gene names: 203283986

Gene position: 67645-67199 (Counterclockwise)

Preceding gene: 203283987

Following gene: 203283985

Centisome position: 7.26

GC content: 28.86

Gene sequence:

>447_bases
TTGATAAAAGAGGAGTTGAATTTATGGGCAGAAGGTGTTGAGTTTAGACATTGGGATGCTTATTATAATTTTATTTTATC
TGTTCTCAATTTTCTTTGTATTAAAGAATATGAGCTGTCTGTTATCCTATGCAATAATGAGTATATTCAAAAGTTAAATG
GTGAATTTAGGCAAAAACCAGAGCCTACTGATGTTTTGTCTTTTAATTATTTTGAAGGTAGTGAACAAATAAATCATAAA
ATACAAGGAGATATTATCATATCCCTTGAATATTTGGAGTTTAGTTCTTTAGAATTTAATGTTGAAATGTATGAAGAGCT
TCAAAGAAATACTATACATGGGATTTTGCATTTAATAGGGTATACTCATGATACAAATGATTTTCAAAATGAGACAATGT
TGATTATTCAGGAACGGGTTTTAAGAGAAACCAGAAGGGTATTTTGA

Upstream 100 bases:

>100_bases
TGTTTAAAGTTTAATAAGGGTTTTAATTATAAAAAATTGAACTCTTGTCTGTTTATATAATGTTCTTTTTAAGTTATAAT
TAATTTTAGGATATAGTGAA

Downstream 100 bases:

>100_bases
TGTTCAAGTTTTTTAATTTTAAAAATAAAAAGATGAAATATGTTGAGGGTAAAGATAGTGAAGAAAAATCGAGATTTGAA
ACATCTTTGCTTAATAATTT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MIKEELNLWAEGVEFRHWDAYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKPEPTDVLSFNYFEGSEQINHK
IQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIGYTHDTNDFQNETMLIIQERVLRETRRVF

Sequences:

>Translated_148_residues
MIKEELNLWAEGVEFRHWDAYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKPEPTDVLSFNYFEGSEQINHK
IQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIGYTHDTNDFQNETMLIIQERVLRETRRVF
>Mature_148_residues
MIKEELNLWAEGVEFRHWDAYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKPEPTDVLSFNYFEGSEQINHK
IQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIGYTHDTNDFQNETMLIIQERVLRETRRVF

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BORDL (B5RKV9)

Other databases:

- EMBL:   CP000976
- RefSeq:   YP_002221726.1
- EnsemblBacteria:   EBBORT00000001213
- GeneID:   6918148
- GenomeReviews:   CP000976_GR
- KEGG:   bdu:BDU_64
- GeneTree:   EBGT00050000007333
- HOGENOM:   HBG352936
- OMA:   ELQRNTI
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17821; Mature: 17821

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEELNLWAEGVEFRHWDAYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKP
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCHHHCCC
EPTDVLSFNYFEGSEQINHKIQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIG
CCCCEEEEECCCCCHHHCCEECCEEEEEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHC
YTHDTNDFQNETMLIIQERVLRETRRVF
CCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKEELNLWAEGVEFRHWDAYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKP
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCHHHCCC
EPTDVLSFNYFEGSEQINHKIQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIG
CCCCEEEEECCCCCHHHCCEECCEEEEEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHC
YTHDTNDFQNETMLIIQERVLRETRRVF
CCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA