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The map label for this gene is vlp-c-2 [H]

Identifier: 203283929

GI number: 203283929

Start: 3342

End: 4421

Strand: Reverse

Name: vlp-c-2 [H]

Synonym: BDU_3

Alternate gene names: 203283929

Gene position: 4421-3342 (Counterclockwise)

Preceding gene: 203283930

Following gene: 203283928

Centisome position: 0.47

GC content: 38.52

Gene sequence:

>1080_bases
ATGGGGAGAATAGTAAAAGGAATAATAATGGGGATGATGGTGGTAGTGATGGGATGTAATGGTGGGGGAGTAGGAGGAGA
AAGTGGAGAGAATAATTTTTTGAAGTCATTAATTAATGTGAGTAATGAATTTATAAATGTTTTCACATCATTTGGGAATA
TGGTATGGAGTGTATTGGGATTGAAGGCGGATTCTAAGAAGTCCGATGTTGGGAATTATTTTAAGACAGTACAGGGTACA
GTAGAGGGAGTTAAAACAGGACTTAATAAAATTGTTGCTGATATGAAAAAAGAGAGTAATCCTAATGCTGTAGCTACTGA
GACTGCAGTAAATAAATTAGTTACTGAAACACTTGATAAAATAATTGCTGGGGCAAAGACAGCAAGTGAGGCAATTGGTG
GTGATGCTAATGCTCTAATTGGAAATGTTGCTGCTGGTGGTGCTAATGATTCTGCAGGTGTATCTGGTAGTGAGATTGAT
AGTCTAGTAAAGGGAATTAAGGGGATTGTTGATATAGTACTTAAGGGTATAGGGAAGGCTGATGCTGGGGATGGTAAAAA
AGCCGATGCTCTTGGAGCAAGAGGTGATAATGCTGGTGATGTAGGAAAGTTATTTGGTAATACTGGTAATAATGGTGGTA
TTGATTCTGCAGATAATGCAAAGAAGGCAGGTGCAGATGCAGCAAAAGCAGTTGGGGCAGTAACTGGTGCTGATATTTTA
CAAGCTGTAGTTAAAGATGGTGGTGATGCTTCTAAGTTAGCTGCTAATAGTCCTACCTCTGATGTTGCTGGGGTATCTCA
GAATGCTAAGGATGGCACTATTGCAGGGGGAATAGCATTAAGAGCAATGGCTAAGGGAGGTAAATTTGCTAATGATAATA
CTGCTGCTAATGTTGATGTTGTTACTGCGGTTAAAGGAGCAGCAGTAAGTGCGGTGACTAAGGCATTAGATACATTAACA
GTAGCAATAAGAAGTACTATTGATGAAGGACTTAAAAGTGTTAAAGAAGCAATGAAAACTAATATTAATGTTACTTCTGT
AGCATCTGAGAATAGTGGTTCTAGTGGTCAAAATCAATAA

Upstream 100 bases:

>100_bases
AAAAGGAGGCGAAGAAAATGAATAGAGAAGTAAAAGAAGGAGAAATAAAAGGGAAGAGAGGAATAGAGAGAGTGAGAGAG
AAATAGAGAGAGGAGAGAAG

Downstream 100 bases:

>100_bases
TTATAATTACTTTATTAAATAATAAAGTAAGAGAAGTAAAATTATAAAGTAAAGATACTGGGATTTAAGTTCTTGGTATC
TTTTTTTAGAGTATATTGAA

Product: vlp protein, gamma subfamily

Products: NA

Alternate protein names: Fragment [H]

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MGRIVKGIIMGMMVVVMGCNGGGVGGESGENNFLKSLINVSNEFINVFTSFGNMVWSVLGLKADSKKSDVGNYFKTVQGT
VEGVKTGLNKIVADMKKESNPNAVATETAVNKLVTETLDKIIAGAKTASEAIGGDANALIGNVAAGGANDSAGVSGSEID
SLVKGIKGIVDIVLKGIGKADAGDGKKADALGARGDNAGDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADIL
QAVVKDGGDASKLAANSPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDVVTAVKGAAVSAVTKALDTLT
VAIRSTIDEGLKSVKEAMKTNINVTSVASENSGSSGQNQ

Sequences:

>Translated_359_residues
MGRIVKGIIMGMMVVVMGCNGGGVGGESGENNFLKSLINVSNEFINVFTSFGNMVWSVLGLKADSKKSDVGNYFKTVQGT
VEGVKTGLNKIVADMKKESNPNAVATETAVNKLVTETLDKIIAGAKTASEAIGGDANALIGNVAAGGANDSAGVSGSEID
SLVKGIKGIVDIVLKGIGKADAGDGKKADALGARGDNAGDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADIL
QAVVKDGGDASKLAANSPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDVVTAVKGAAVSAVTKALDTLT
VAIRSTIDEGLKSVKEAMKTNINVTSVASENSGSSGQNQ
>Mature_358_residues
GRIVKGIIMGMMVVVMGCNGGGVGGESGENNFLKSLINVSNEFINVFTSFGNMVWSVLGLKADSKKSDVGNYFKTVQGTV
EGVKTGLNKIVADMKKESNPNAVATETAVNKLVTETLDKIIAGAKTASEAIGGDANALIGNVAAGGANDSAGVSGSEIDS
LVKGIKGIVDIVLKGIGKADAGDGKKADALGARGDNAGDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADILQ
AVVKDGGDASKLAANSPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDVVTAVKGAAVSAVTKALDTLTV
AIRSTIDEGLKSVKEAMKTNINVTSVASENSGSSGQNQ

Specific function: The vlp and vsp proteins are antigenically distinct proteins, only one vlp or vsp gene is transcriptionally active at any one time. Switching between these genes is a mechanism of host immune reponse evasion [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the variable large protein (vlp) family. Gamma subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000680
- InterPro:   IPR001800 [H]

Pfam domain/function: PF00921 Lipoprotein_2; PF01441 Lipoprotein_6 [H]

EC number: NA

Molecular weight: Translated: 35535; Mature: 35404

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRIVKGIIMGMMVVVMGCNGGGVGGESGENNFLKSLINVSNEFINVFTSFGNMVWSVLG
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKADSKKSDVGNYFKTVQGTVEGVKTGLNKIVADMKKESNPNAVATETAVNKLVTETLDK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IIAGAKTASEAIGGDANALIGNVAAGGANDSAGVSGSEIDSLVKGIKGIVDIVLKGIGKA
HHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DAGDGKKADALGARGDNAGDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADIL
CCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
QAVVKDGGDASKLAANSPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDV
HHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEH
VTAVKGAAVSAVTKALDTLTVAIRSTIDEGLKSVKEAMKTNINVTSVASENSGSSGQNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
GRIVKGIIMGMMVVVMGCNGGGVGGESGENNFLKSLINVSNEFINVFTSFGNMVWSVLG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKADSKKSDVGNYFKTVQGTVEGVKTGLNKIVADMKKESNPNAVATETAVNKLVTETLDK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IIAGAKTASEAIGGDANALIGNVAAGGANDSAGVSGSEIDSLVKGIKGIVDIVLKGIGKA
HHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DAGDGKKADALGARGDNAGDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADIL
CCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
QAVVKDGGDASKLAANSPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDV
HHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEH
VTAVKGAAVSAVTKALDTLTVAIRSTIDEGLKSVKEAMKTNINVTSVASENSGSSGQNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA