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The map label for this gene is vlp-c-1 [H]

Identifier: 203283928

GI number: 203283928

Start: 2113

End: 3060

Strand: Reverse

Name: vlp-c-1 [H]

Synonym: BDU_2

Alternate gene names: 203283928

Gene position: 3060-2113 (Counterclockwise)

Preceding gene: 203283929

Following gene: 203283927

Centisome position: 0.33

GC content: 37.45

Gene sequence:

>948_bases
TTGCAGTCATTAGTTAATGTGAGTGAAGAATTTTTGAATGTTTTCACTTCATTTGGGGAAATGGTAGGGAGTGTATTGGG
GTTGAATGTTAATTCAAAGAAATCGGATGTAGGGAAATATTTTAAGACGGTACAGAGTACAGTAGAAGGAGTGAAAATAG
GGCTTAATAAAATTGTTAGTGATATGAAGGAAGAAAAGAATCCGAATGCTGAGGCTACTGCTACTGCGGTGAAAACATTA
ATTGAGAGTAAACTAGATAAGATAATTGGTGGAGCAAAGACAGCAAGTGAGGCAATTGGAGATGCTAGTGGTCTACTTGG
TGATATGGCCAATGCTGCTGTTGGTGGTACTGTTGGTGAAGTTGATAAATTAATAAATGGAATTAAAGGTATTGTGGATG
TAGTCCTTAAAGAAGGAAATCCTGTTGCTGGTACTGAGAAAAAAGCTTTAGATGGGCAGACTGACAGAACTGGTGGTAAT
GCTGCTGATGATGAAGCAGGAAAGTTATTTAATGGTACGAATGCTGGTGCTGCTGGTACTAATGCAAAAAAATCAGCAGC
TGATGCAGCTAAAGCAGTAGGAGCAGTAACTGGTGCTGATATATTACAAGCTATGATTAAAGTTGGTGGTGGTGCTTATA
AATTGGCAAATGCTAAAGATGATGATAAGCCATCTACTAAGAAAGATGCTATTATAGCGGGAGCTATAGCATTGAGAGCA
ATGGCAAAGGGTGGTAAATTTGCTGGTCAGGCTAATGCTGAAGATGCTATTATTGTAGTTAAAGATGCGGCAATAAGTGC
AGTAACTAAAGCATTAGATATATTAACAGTAGCAATAAGAAGAAGTATTGATATAGGACTTAAGAGTGTAAAAGAAGCAA
TGAAAATTAATACTAATGCTACTACTGTAGCATCTGAGAATGGTGGTTCTGGTGGTCAAAATAAATAG

Upstream 100 bases:

>100_bases
TAAAAAAAAGCAGAAAGGATAAAAGAGGCGAGAGAAAAGGGATAAAAAAGAGAGGAATAATAATGGAGTGTTATAAGCAG
AGGAAGGGAAGAATAAATTT

Downstream 100 bases:

>100_bases
GCAAAGTTATGTAAGTAAATAATAAAAATAAAGTCATAAAGTGAAGATACTAAGAGTGAAGCTTTTGGTATCTTGTATTT
TATAGTGTGTTAAACAGAAA

Product: vlp protein, gamma subfamily

Products: NA

Alternate protein names: Fragment [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQSLVNVSEEFLNVFTSFGEMVGSVLGLNVNSKKSDVGKYFKTVQSTVEGVKIGLNKIVSDMKEEKNPNAEATATAVKTL
IESKLDKIIGGAKTASEAIGDASGLLGDMANAAVGGTVGEVDKLINGIKGIVDVVLKEGNPVAGTEKKALDGQTDRTGGN
AADDEAGKLFNGTNAGAAGTNAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRA
MAKGGKFAGQANAEDAIIVVKDAAISAVTKALDILTVAIRRSIDIGLKSVKEAMKINTNATTVASENGGSGGQNK

Sequences:

>Translated_315_residues
MQSLVNVSEEFLNVFTSFGEMVGSVLGLNVNSKKSDVGKYFKTVQSTVEGVKIGLNKIVSDMKEEKNPNAEATATAVKTL
IESKLDKIIGGAKTASEAIGDASGLLGDMANAAVGGTVGEVDKLINGIKGIVDVVLKEGNPVAGTEKKALDGQTDRTGGN
AADDEAGKLFNGTNAGAAGTNAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRA
MAKGGKFAGQANAEDAIIVVKDAAISAVTKALDILTVAIRRSIDIGLKSVKEAMKINTNATTVASENGGSGGQNK
>Mature_315_residues
MQSLVNVSEEFLNVFTSFGEMVGSVLGLNVNSKKSDVGKYFKTVQSTVEGVKIGLNKIVSDMKEEKNPNAEATATAVKTL
IESKLDKIIGGAKTASEAIGDASGLLGDMANAAVGGTVGEVDKLINGIKGIVDVVLKEGNPVAGTEKKALDGQTDRTGGN
AADDEAGKLFNGTNAGAAGTNAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRA
MAKGGKFAGQANAEDAIIVVKDAAISAVTKALDILTVAIRRSIDIGLKSVKEAMKINTNATTVASENGGSGGQNK

Specific function: The vlp and vsp proteins are antigenically distinct proteins, only one vlp or vsp gene is transcriptionally active at any one time. Switching between these genes is a mechanism of host immune reponse evasion [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the variable large protein (vlp) family. Gamma subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000680
- InterPro:   IPR001800 [H]

Pfam domain/function: PF00921 Lipoprotein_2; PF01441 Lipoprotein_6 [H]

EC number: NA

Molecular weight: Translated: 31794; Mature: 31794

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLVNVSEEFLNVFTSFGEMVGSVLGLNVNSKKSDVGKYFKTVQSTVEGVKIGLNKIVS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMKEEKNPNAEATATAVKTLIESKLDKIIGGAKTASEAIGDASGLLGDMANAAVGGTVGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VDKLINGIKGIVDVVLKEGNPVAGTEKKALDGQTDRTGGNAADDEAGKLFNGTNAGAAGT
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
NAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
MAKGGKFAGQANAEDAIIVVKDAAISAVTKALDILTVAIRRSIDIGLKSVKEAMKINTNA
HHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTVASENGGSGGQNK
EEEECCCCCCCCCCC
>Mature Secondary Structure
MQSLVNVSEEFLNVFTSFGEMVGSVLGLNVNSKKSDVGKYFKTVQSTVEGVKIGLNKIVS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMKEEKNPNAEATATAVKTLIESKLDKIIGGAKTASEAIGDASGLLGDMANAAVGGTVGE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VDKLINGIKGIVDVVLKEGNPVAGTEKKALDGQTDRTGGNAADDEAGKLFNGTNAGAAGT
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
NAKKSAADAAKAVGAVTGADILQAMIKVGGGAYKLANAKDDDKPSTKKDAIIAGAIALRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
MAKGGKFAGQANAEDAIIVVKDAAISAVTKALDILTVAIRRSIDIGLKSVKEAMKINTNA
HHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTVASENGGSGGQNK
EEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA