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The map label for this gene is LigT

Identifier: 20094803

GI number: 20094803

Start: 1395443

End: 1396009

Strand: Reverse

Name: LigT

Synonym: MK1367

Alternate gene names: NA

Gene position: 1396009-1395443 (Counterclockwise)

Preceding gene: 20094805

Following gene: 20094802

Centisome position: 82.36

GC content: 65.08

Gene sequence:

>567_bases
GTGTCGCGGTTCAGGGCGTTCATCTCGATCGATATAGAGGACGAGGAGGTCGTGAACCGGATCGTCGAGGTGCAGGAGCG
GTTGAAGGCCTCGGGAGCCGACCTGAAGCTGGTGGAGCCGGAGAACGTGCACCTCACGCTCAAGTTCCTGGGTGACATCC
CCGAGTCGCGCGTCACCGATGTGGTCAACGCGATGGAGAAGGCCGCCGAGACTGTCGAGCCCTTCACGATGCGGCTGAAG
GGGATCGGGGTGTTCCCGAACCCCAACTACGTGCGCGTGGTGTGGATCGGCGTGCAGGAGGGGTCTGACGAGACCAAGGC
CATGGCCGCGGTGCTCGAGCAGGAGCTCGGTCGGATGGGGTTCCGGCGGGAGCGGAAGGACTTCGTGCCCCACGTGACCG
TGGCCAGGGTCCGGAGCGGGCGCAACAAGGGCCGGCTGATCGAGGCCATCCGCGAGCTCTCGAACGTGGAGGTCGGTGAG
GTGGAGGTCGACCGGATCCGGCTCAAGAAGAGCATCCTCAGGCCTCAGGGTCCTGAGTACCACACGGTCGAGGAGGTCGA
GATCTGA

Upstream 100 bases:

>100_bases
GGATCACGGGGTTCGGCGGGGATGCTAAGCCCCCCGGTCGCCTCCTCCGTGAGAACTGCCTTTTACGAACCCGTAATTAA
CTTCGCCGGGGGTGGGACGC

Downstream 100 bases:

>100_bases
ACCGATGTGCCCGGCGCGGCGTCGTTCCGGGCGTCACGCCCCGAGGAGATCGGGATTCGGGGGATCGGGACTTAACCCTC
ATAAGCCCGGCACTGGACGA

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSRFRAFISIDIEDEEVVNRIVEVQERLKASGADLKLVEPENVHLTLKFLGDIPESRVTDVVNAMEKAAETVEPFTMRLK
GIGVFPNPNYVRVVWIGVQEGSDETKAMAAVLEQELGRMGFRRERKDFVPHVTVARVRSGRNKGRLIEAIRELSNVEVGE
VEVDRIRLKKSILRPQGPEYHTVEEVEI

Sequences:

>Translated_188_residues
MSRFRAFISIDIEDEEVVNRIVEVQERLKASGADLKLVEPENVHLTLKFLGDIPESRVTDVVNAMEKAAETVEPFTMRLK
GIGVFPNPNYVRVVWIGVQEGSDETKAMAAVLEQELGRMGFRRERKDFVPHVTVARVRSGRNKGRLIEAIRELSNVEVGE
VEVDRIRLKKSILRPQGPEYHTVEEVEI
>Mature_187_residues
SRFRAFISIDIEDEEVVNRIVEVQERLKASGADLKLVEPENVHLTLKFLGDIPESRVTDVVNAMEKAAETVEPFTMRLKG
IGVFPNPNYVRVVWIGVQEGSDETKAMAAVLEQELGRMGFRRERKDFVPHVTVARVRSGRNKGRLIEAIRELSNVEVGEV
EVDRIRLKKSILRPQGPEYHTVEEVEI

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21392; Mature: 21261

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFRAFISIDIEDEEVVNRIVEVQERLKASGADLKLVEPENVHLTLKFLGDIPESRVTD
CCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCHHHHHH
VVNAMEKAAETVEPFTMRLKGIGVFPNPNYVRVVWIGVQEGSDETKAMAAVLEQELGRMG
HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
FRRERKDFVPHVTVARVRSGRNKGRLIEAIRELSNVEVGEVEVDRIRLKKSILRPQGPEY
CHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
HTVEEVEI
CCCCCCCC
>Mature Secondary Structure 
SRFRAFISIDIEDEEVVNRIVEVQERLKASGADLKLVEPENVHLTLKFLGDIPESRVTD
CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCHHHHHH
VVNAMEKAAETVEPFTMRLKGIGVFPNPNYVRVVWIGVQEGSDETKAMAAVLEQELGRMG
HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
FRRERKDFVPHVTVARVRSGRNKGRLIEAIRELSNVEVGEVEVDRIRLKKSILRPQGPEY
CHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
HTVEEVEI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]