Click here to switch to the map view.

The map label for this gene is POP5 [H]

Identifier: 20093824

GI number: 20093824

Start: 370595

End: 371089

Strand: Reverse

Name: POP5 [H]

Synonym: MK0386

Alternate gene names: 20093824

Gene position: 371089-370595 (Counterclockwise)

Preceding gene: 20093825

Following gene: 20093823

Centisome position: 21.89

GC content: 59.39

Gene sequence:

>495_bases
GTGAAACACATGCGTGTGCGTCTGTCCTCCGCACTCCGCCCCAGATGGCGTTATGTAACGTTCAAGGTATGGTCGGAGCG
CGTCGAAGCGCTGGACTTCGGGGGGATGAAGGACCTCGTCGTTCGGGCTCTACTTTCGGTGCTGGGGCCCACGGGAACCG
GCCGGATCGGACCATGGCTCGTACGTAGTTACCGTGATCTCAACGCGGGTATCTTGAGGGTGCGACGGGGTCAAGAGGAG
GAGGCACGTGCGGCATTATCCTTATACCGTCGGGATCCGAAGCTCGGGCGTGTTTTCATCGAGGTTCTCGGTACCTCCGG
AACGATTAAAGGGGCGGAACGGTACCTCTCTCGAATCCCGAAATGGGACCGTGAGCGGGTGGGGAACCGCGAGTTCGTGT
TGTACGAGAACGGTGAAGTCGACGTCGTGGAGGATGGTCGTATAGTGGCGTTCGCTAGCTTCGAATGTCCACTGCCTGAG
GAGAATCGGGGGTAG

Upstream 100 bases:

>100_bases
GCGAGGTGAAGGAGATGTGTGTCGAGGCTCCCAGGGAAATCCTCCGGTGGAACGCGGCGTGTAAGCACGTTTTCACAGTG
CCAGGCGTCGTCTCACTGGG

Downstream 100 bases:

>100_bases
TGGCCGTGCAACCCGCTCAGACGGCGTATGACCGGGCCATCACCGTCTTCAGCCCGGACGGTCGACTGTTCCAGGTCGAG
TACGCGCGCGAGGCCGTCAA

Product: exosome subunit, RNase P subunit P14

Products: NA

Alternate protein names: RNase P component 2 [H]

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKHMRVRLSSALRPRWRYVTFKVWSERVEALDFGGMKDLVVRALLSVLGPTGTGRIGPWLVRSYRDLNAGILRVRRGQEE
EARAALSLYRRDPKLGRVFIEVLGTSGTIKGAERYLSRIPKWDRERVGNREFVLYENGEVDVVEDGRIVAFASFECPLPE
ENRG

Sequences:

>Translated_164_residues
MKHMRVRLSSALRPRWRYVTFKVWSERVEALDFGGMKDLVVRALLSVLGPTGTGRIGPWLVRSYRDLNAGILRVRRGQEE
EARAALSLYRRDPKLGRVFIEVLGTSGTIKGAERYLSRIPKWDRERVGNREFVLYENGEVDVVEDGRIVAFASFECPLPE
ENRG
>Mature_164_residues
MKHMRVRLSSALRPRWRYVTFKVWSERVEALDFGGMKDLVVRALLSVLGPTGTGRIGPWLVRSYRDLNAGILRVRRGQEE
EARAALSLYRRDPKLGRVFIEVLGTSGTIKGAERYLSRIPKWDRERVGNREFVLYENGEVDVVEDGRIVAFASFECPLPE
ENRG

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends [H]

COG id: COG1369

COG function: function code J; RNase P/RNase MRP subunit POP5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002759
- InterPro:   IPR016434 [H]

Pfam domain/function: PF01900 RNase_P_Rpp14 [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 18821; Mature: 18821

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMRVRLSSALRPRWRYVTFKVWSERVEALDFGGMKDLVVRALLSVLGPTGTGRIGPWL
CCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
VRSYRDLNAGILRVRRGQEEEARAALSLYRRDPKLGRVFIEVLGTSGTIKGAERYLSRIP
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC
KWDRERVGNREFVLYENGEVDVVEDGRIVAFASFECPLPEENRG
CCCHHHCCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKHMRVRLSSALRPRWRYVTFKVWSERVEALDFGGMKDLVVRALLSVLGPTGTGRIGPWL
CCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
VRSYRDLNAGILRVRRGQEEEARAALSLYRRDPKLGRVFIEVLGTSGTIKGAERYLSRIP
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC
KWDRERVGNREFVLYENGEVDVVEDGRIVAFASFECPLPEENRG
CCCHHHCCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]