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The map label for this gene is 20093822

Identifier: 20093822

GI number: 20093822

Start: 369130

End: 369852

Strand: Reverse

Name: 20093822

Synonym: MK0384

Alternate gene names: NA

Gene position: 369852-369130 (Counterclockwise)

Preceding gene: 20093823

Following gene: 20093821

Centisome position: 21.82

GC content: 57.81

Gene sequence:

>723_bases
ATGGCCCGAGTCAGTCTAGAAGACGCCGTGGTAGCGCGTCTGGAGAAGGGAGGCGAGCGCTTCGAGGTACTCGTAGACCC
CGAAGGGGCCCGTAAATTCCGGGAAGGTGAAGACGTGGACGTTGAGGAGATACTGGCCGTGGAACAAGTCTTTCGTGACG
CTAGGAAGGGTGAGAGAGCCTCAGAGCAAGCGATGGAGGAACTTTTCGGCACTTCCGATCCCATTAAGGTCGCGGAAATC
GTGATCAAGGAGGGGGAAATACAGCTAACCGCGGAACAACGAAGAAGGATGCAGGAAGAGGTCAAACGGAAAATCATCCA
CATAATCGCCCGCCGTGCGGTGGATCCCAGAACGGGGGCCCCGCATCCTCCTGAGCGGATCGAGCGGGCCATGGAGGAGG
CCGGTGTTCACATCGACCCTATGAAAAGTGCCGAGGAGCAGGTAAAGGACGTCATCAAGCAGTTGCGTCCGGTCCTACCG
ATGAAGTTTGAGGAAGTGAAAGTGGCCATCCGTATCCCCGCGAAGTACACCGGACAGGCTATGGGCGTCGTGCGCGAATT
CGGCGATATCGAGCGGGAGGAGTGGCAGTACGACGGCGCCTGGGTGGCCGTAGTCCGCTTACCGGCGGGACTGCAGGACG
AGTTCTTCGAGAAGCTTAACGAGATCACGAAAGGAGATTTCGAGAGCAAAATACTGGAGAGGGAGAGTGTGGAGGGTCCC
TGA

Upstream 100 bases:

>100_bases
CCGTCGTCGATAAACAAGGGTTCCGGAAGTTGGAGCGGAAGAAGATCGAGGAGATGTTTGAACGTGTAGTCGGTTCGGAG
GAAGACGAGGGTGAATGACG

Downstream 100 bases:

>100_bases
ATGGGAACCGTCGAAACCCTCACGGAACACCTACGCGAGCTGGTCGGCCGTGTGGCTCCACCGGGCTGGGAGGACGAGGT
CCGCGAGTACGTGGAGGCCA

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MARVSLEDAVVARLEKGGERFEVLVDPEGARKFREGEDVDVEEILAVEQVFRDARKGERASEQAMEELFGTSDPIKVAEI
VIKEGEIQLTAEQRRRMQEEVKRKIIHIIARRAVDPRTGAPHPPERIERAMEEAGVHIDPMKSAEEQVKDVIKQLRPVLP
MKFEEVKVAIRIPAKYTGQAMGVVREFGDIEREEWQYDGAWVAVVRLPAGLQDEFFEKLNEITKGDFESKILERESVEGP

Sequences:

>Translated_240_residues
MARVSLEDAVVARLEKGGERFEVLVDPEGARKFREGEDVDVEEILAVEQVFRDARKGERASEQAMEELFGTSDPIKVAEI
VIKEGEIQLTAEQRRRMQEEVKRKIIHIIARRAVDPRTGAPHPPERIERAMEEAGVHIDPMKSAEEQVKDVIKQLRPVLP
MKFEEVKVAIRIPAKYTGQAMGVVREFGDIEREEWQYDGAWVAVVRLPAGLQDEFFEKLNEITKGDFESKILERESVEGP
>Mature_239_residues
ARVSLEDAVVARLEKGGERFEVLVDPEGARKFREGEDVDVEEILAVEQVFRDARKGERASEQAMEELFGTSDPIKVAEIV
IKEGEIQLTAEQRRRMQEEVKRKIIHIIARRAVDPRTGAPHPPERIERAMEEAGVHIDPMKSAEEQVKDVIKQLRPVLPM
KFEEVKVAIRIPAKYTGQAMGVVREFGDIEREEWQYDGAWVAVVRLPAGLQDEFFEKLNEITKGDFESKILERESVEGP

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=169, Percent_Identity=30.1775147928994, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25144459, Length=196, Percent_Identity=27.0408163265306, Blast_Score=107, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6323050, Length=178, Percent_Identity=30.8988764044944, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24659572, Length=195, Percent_Identity=24.1025641025641, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 27372; Mature: 27240

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01267 UPF0023

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVSLEDAVVARLEKGGERFEVLVDPEGARKFREGEDVDVEEILAVEQVFRDARKGERA
CCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHH
SEQAMEELFGTSDPIKVAEIVIKEGEIQLTAEQRRRMQEEVKRKIIHIIARRAVDPRTGA
HHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PHPPERIERAMEEAGVHIDPMKSAEEQVKDVIKQLRPVLPMKFEEVKVAIRIPAKYTGQA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHH
MGVVREFGDIEREEWQYDGAWVAVVRLPAGLQDEFFEKLNEITKGDFESKILERESVEGP
HHHHHHHHCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ARVSLEDAVVARLEKGGERFEVLVDPEGARKFREGEDVDVEEILAVEQVFRDARKGERA
CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHH
SEQAMEELFGTSDPIKVAEIVIKEGEIQLTAEQRRRMQEEVKRKIIHIIARRAVDPRTGA
HHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PHPPERIERAMEEAGVHIDPMKSAEEQVKDVIKQLRPVLPMKFEEVKVAIRIPAKYTGQA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHH
MGVVREFGDIEREEWQYDGAWVAVVRLPAGLQDEFFEKLNEITKGDFESKILERESVEGP
HHHHHHHHCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]