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The map label for this gene is ydcP [C]

Identifier: 20093459

GI number: 20093459

Start: 18347

End: 19369

Strand: Direct

Name: ydcP [C]

Synonym: MK0019

Alternate gene names: 20093459

Gene position: 18347-19369 (Clockwise)

Preceding gene: 20093458

Following gene: 20093460

Centisome position: 1.08

GC content: 60.41

Gene sequence:

>1023_bases
GTGTTCTCCGTTCCCTCCCCCGGAGACCCTGCCCTCACCGACCGACTTCTACGGTCGCTCCCGACTGACCGGATCGAAAC
AGTCTACTTCGGCCTCCCGATCGCCGGGACAGGACGCGCCACACCCGTGCAGGTCGACACGGACACGGCGACCGAGCTCG
CAGAGGTTTGTCACTCGTATTCGGTGGAACCGGAAGCCGTCATCAACCCACTTTGCACGGCGGATGTAGTCTGCTCTCGC
AACGCCTTCGCAGAGTTCGAGCGGACACTCGACGATCTCGACGACGCCGGGATCGAACGTCTAGTACTCTCCGATCCGTT
GATGATCCACGCCGCGGTGGAGCGTGGCTTCCGCGTCTCAGTCTCTTGTGTAGTGGAGGTGAACACACCCGAGCGCGCCC
GGTACTTCGATGAAATAGGAGTGGAGGAGATCACCTTGGACACGAACGTGAACCGACGCCTCGACACCATCGAAGCGATA
GCGTCCGAGGTCTCCGCACGCCTCCGGATCATCGTTAACGAAGGGTGCTTACCCGACTGCCCGTACCGGGCCTCACATTT
CTGTCTGTTCTCCCACGCCACCCGGCCCGGCGAAGAAGTGGCGGAAGATCCCTACTTCGTACGTTGCATCTCCGAGCGCG
TGAACAACCCGACGCTGATAATCAAGTCACCATTTGTGCGACCTGAAGACCTGAGCGTCTACATGGATCTCGGTGTAAGG
GCGTTCAAAATCGCGGGACGTGCGAACTCGATCACGTGGATACGTCGGGCCGTACGGGCTTACCTGCGGGGCCGATACGA
CGGCAATCTCCTCGACATACTCGACTGTCCGACCGTCCTCCGGCACCTGTATCACGTGGATAACCGGGAGCTGGATGGGT
TCCTAAAGCGGGTAGGTCGGTGTGATCGTCGGTGTTCGAAGTGCGGATTCTGTGCCGAGCTTGCTGAGCGGGCCGTAGAG
CCGTTGGGCGGTCTAGAAGATGCCGAAGTTGAACCAGCGAGGACTGGTCGAGTTACGGCGTGA

Upstream 100 bases:

>100_bases
AGACCACGTCCCGTTAACTCGCAGTAATACCCGAAGCTCGGTCGGAAATAAAAAACGCTCTTCTTCATTTCCCGAACCAC
CAATCCTCCGGGGACGGGCA

Downstream 100 bases:

>100_bases
GTTGGAGCGGCGGCTCGTAGAACTGCTGGGCAAACCGGTACACGTGATGCAGCTGACGATCTTCGCGCTACCGTGCGGAT
GTGTAGGTGCTTCTCTGGAG

Product: protease related to collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MFSVPSPGDPALTDRLLRSLPTDRIETVYFGLPIAGTGRATPVQVDTDTATELAEVCHSYSVEPEAVINPLCTADVVCSR
NAFAEFERTLDDLDDAGIERLVLSDPLMIHAAVERGFRVSVSCVVEVNTPERARYFDEIGVEEITLDTNVNRRLDTIEAI
ASEVSARLRIIVNEGCLPDCPYRASHFCLFSHATRPGEEVAEDPYFVRCISERVNNPTLIIKSPFVRPEDLSVYMDLGVR
AFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILDCPTVLRHLYHVDNRELDGFLKRVGRCDRRCSKCGFCAELAERAVE
PLGGLEDAEVEPARTGRVTA

Sequences:

>Translated_340_residues
MFSVPSPGDPALTDRLLRSLPTDRIETVYFGLPIAGTGRATPVQVDTDTATELAEVCHSYSVEPEAVINPLCTADVVCSR
NAFAEFERTLDDLDDAGIERLVLSDPLMIHAAVERGFRVSVSCVVEVNTPERARYFDEIGVEEITLDTNVNRRLDTIEAI
ASEVSARLRIIVNEGCLPDCPYRASHFCLFSHATRPGEEVAEDPYFVRCISERVNNPTLIIKSPFVRPEDLSVYMDLGVR
AFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILDCPTVLRHLYHVDNRELDGFLKRVGRCDRRCSKCGFCAELAERAVE
PLGGLEDAEVEPARTGRVTA
>Mature_340_residues
MFSVPSPGDPALTDRLLRSLPTDRIETVYFGLPIAGTGRATPVQVDTDTATELAEVCHSYSVEPEAVINPLCTADVVCSR
NAFAEFERTLDDLDDAGIERLVLSDPLMIHAAVERGFRVSVSCVVEVNTPERARYFDEIGVEEITLDTNVNRRLDTIEAI
ASEVSARLRIIVNEGCLPDCPYRASHFCLFSHATRPGEEVAEDPYFVRCISERVNNPTLIIKSPFVRPEDLSVYMDLGVR
AFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILDCPTVLRHLYHVDNRELDGFLKRVGRCDRRCSKCGFCAELAERAVE
PLGGLEDAEVEPARTGRVTA

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37848; Mature: 37848

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVPSPGDPALTDRLLRSLPTDRIETVYFGLPIAGTGRATPVQVDTDTATELAEVCHSY
CCCCCCCCCHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHC
SVEPEAVINPLCTADVVCSRNAFAEFERTLDDLDDAGIERLVLSDPLMIHAAVERGFRVS
CCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCEEE
VSCVVEVNTPERARYFDEIGVEEITLDTNVNRRLDTIEAIASEVSARLRIIVNEGCLPDC
EEEEEEECCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCC
PYRASHFCLFSHATRPGEEVAEDPYFVRCISERVNNPTLIIKSPFVRPEDLSVYMDLGVR
CCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCE
AFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILDCPTVLRHLYHVDNRELDGFLKRVGR
EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
CDRRCSKCGFCAELAERAVEPLGGLEDAEVEPARTGRVTA
HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFSVPSPGDPALTDRLLRSLPTDRIETVYFGLPIAGTGRATPVQVDTDTATELAEVCHSY
CCCCCCCCCHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHC
SVEPEAVINPLCTADVVCSRNAFAEFERTLDDLDDAGIERLVLSDPLMIHAAVERGFRVS
CCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCEEE
VSCVVEVNTPERARYFDEIGVEEITLDTNVNRRLDTIEAIASEVSARLRIIVNEGCLPDC
EEEEEEECCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCC
PYRASHFCLFSHATRPGEEVAEDPYFVRCISERVNNPTLIIKSPFVRPEDLSVYMDLGVR
CCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCE
AFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILDCPTVLRHLYHVDNRELDGFLKRVGR
EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
CDRRCSKCGFCAELAERAVEPLGGLEDAEVEPARTGRVTA
HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]