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The map label for this gene is tra [C]

Identifier: 19746783

GI number: 19746783

Start: 1594245

End: 1595234

Strand: Reverse

Name: tra [C]

Synonym: spyM18_1918

Alternate gene names: 19746783

Gene position: 1595234-1594245 (Counterclockwise)

Preceding gene: 19746784

Following gene: 19746782

Centisome position: 84.18

GC content: 42.63

Gene sequence:

>990_bases
ATGCAAGATTATTATACACCAAAAGGCAAACAATTGACAATCCATGAGCGTCGGCAAATTCAACGCTGGAAGCTGGAAGG
TCGCTCTAATCGTGAAATTGCTCGCTTACTAGGTAAGGCCCCCCAGACCATTCATAATGAAATCAAGCGAGGATTGGTTA
GGCAACAGGTTCGTAAAGGAAAGTTTGAAGCCGTTTATTCTGCTCAACATGCTCAGTTGGTCTATCAAGAAAATCGCAAG
CGTTCTGTTAGACCCATTAGACAGCGTAAGCAAGATAGGGAGGCTATTGAACACTACATGCGTCAGAACTATTCCCCTGA
GATGATAGTTAAAGCTAAGGGAGTTCAAGTCCCTGTATCTACCATCTATTACTGGATTCATCATGGGAAATTAAGTCTTG
GTAAGGAGGCTATGCTTTATCCGAGAAAGGCTAAGCAGGCTAGAAAACATGCCAGTCCTTATTTTAAACCCGCAGGAAAG
AGTATTGAACAACGCCCAGATAGCATTAACCAACGTCTTGAAGCTGGGCATTATGAGATTGATACAGTCATTCTGACGAG
GGCTAAAAATCAATGCTTATTCACCCTAACGGACAGGAAAACACGTCATCAGCTGATTCGATTAATACCGGATAAGTCTG
CTCAAGCTGTCAATAAAGCTCTTACGGGGATTCTAAAAGACTACACCGTCAACTCTATCACGGCAGACAACGGGACAGAA
TTTTCTCGCTTATCAGATGTCTTTCCAGCAAGTGACATCTACTATGCCCATCCCTATGCGTCATGGGAGAGAGGCACTAA
CGAAAACCATAATCGCCTGATTCGCAGATGTCTCCCTAAAGGTACCAAAACAACGACCCCTAAAGAAGTCGCTGCTATTG
AACATTGGATCAATCATTATCCTAAACGACTCTTCAACTACAAGTCGCCAGTAGAAATGTTAAAACTGGCTAACTTCAAC
TTGAAATTTGGCATTAACATCAGAATATAG

Upstream 100 bases:

>100_bases
GAAAAATTCTAAAATGAACTTAGCCACTTTTAAGGTATGAAAAAAGCACCTCTAAGAGGTATACTTGTAGTTCACCACAA
ACACAAGGAAACTCAAAAAG

Downstream 100 bases:

>100_bases
GATTTGTCATGTTAAGATTGATCTGTTGATAGTGAGAGCTAATAAAAAATGTTATAATACTATGAAATAAAGTGATAAAG
ATAAGGTCTTTTATGGTCCT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGINIRI

Sequences:

>Translated_329_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGINIRI
>Mature_329_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGINIRI

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790736, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787671, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786450, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38514; Mature: 38514

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKG
CCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
KFEAVYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVS
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
TIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAGHYEI
HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHCCCEEE
DTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
EHEEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHY
HHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
PKRLFNYKSPVEMLKLANFNLKFGINIRI
HHHHHCCCCHHHHHHHHCCCEEEEEEEEC
>Mature Secondary Structure
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKG
CCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
KFEAVYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVS
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
TIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAGHYEI
HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHCCCEEE
DTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
EHEEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHY
HHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
PKRLFNYKSPVEMLKLANFNLKFGINIRI
HHHHHCCCCHHHHHHHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8393068 [H]