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The map label for this gene is potC [H]

Identifier: 197294270

GI number: 197294270

Start: 153705

End: 154511

Strand: Reverse

Name: potC [H]

Synonym: PAa_0133

Alternate gene names: 197294270

Gene position: 154511-153705 (Counterclockwise)

Preceding gene: 197294271

Following gene: 197294269

Centisome position: 17.56

GC content: 28.5

Gene sequence:

>807_bases
ATGAAATCTAATTCTAAAATAAAATTAAAACATATCTTGTATATTGCCATAATTTTAACTTTTATTTATGTTCCAATTGC
ATCTTTAATTCTTTTTTCTTTTAATAAAAGCGAGGGAAGGGTTGCTTCTTTGGTTAATTGGCAAGGGTTTAGTTGGCAAT
GGTATCAAAAACTTTTAAGTGATAAAACCATTAAAACATCAATTGCAATTACTTTAAAAATTGCTTTTTTAACTACAATT
ATATCTACTTTTTTAGGAACTTTTGCAGCTATTAGTTTGGCTCAAAGTTTAAACAAAAAATGGCGAGTTATGATTTTAAA
TGCAAGCAATTTTTCTATTGTAGTGCCTGAAATTATTACAGCTTTATCTTTGTTTGTGGTGTTTGGGTTCATTCGCTTGG
AATCATCTTTTTGGAAAATGCTTTTAGCTCACATTTCTTTTTGCACTCCTTTTGTAGCAATTAGTGTTTATCCAAAAGTT
ATAAGTCTTGATCCTTATTGCTTTGAAGCGGCTTATGATTTAGGAGCAACTCCTTTTAAAGCTTTAATTAAAGTTATTTT
GCCTCAACTCAAAGGAGGTATGTTGGTTGGAGCAACTTTGGCTTTTACTTTGTCTTTTGATGATTTTATTATTTCTTATT
TTGTTGGTGGAGCGGAATGCCAAAATATTTCTGCCTATATTTACAGTCTTAAAGGAACGATAAATCCTTCGGTTAATGCC
TTATCTACTATTTTAATTAGTTTAACTAGTTTCAAAATTATTTTTGATTTTATAAAACAAAAAAAGATGGTTCATAAACA
AAAATGA

Upstream 100 bases:

>100_bases
ACTTTGTTAAGCGGTGAAATTAAGCAAGCTTGTGCGATTGCTATTTACTTATCTTTAGTGATGTTTTTGCTTTTTTACCT
TTTTAAAAAAAGGAGTTACA

Downstream 100 bases:

>100_bases
AGAAATTAAGAAACAAAAGCCTTTTTTATTTTATTATTTGCACGCTTTTTTTAACAATCTTTGTAATGATTTTAATATTT
ATACAAAATAGGACCAAAAA

Product: ABC-type spermidine/putrescine transport system, permease component II

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKSNSKIKLKHILYIAIILTFIYVPIASLILFSFNKSEGRVASLVNWQGFSWQWYQKLLSDKTIKTSIAITLKIAFLTTI
ISTFLGTFAAISLAQSLNKKWRVMILNASNFSIVVPEIITALSLFVVFGFIRLESSFWKMLLAHISFCTPFVAISVYPKV
ISLDPYCFEAAYDLGATPFKALIKVILPQLKGGMLVGATLAFTLSFDDFIISYFVGGAECQNISAYIYSLKGTINPSVNA
LSTILISLTSFKIIFDFIKQKKMVHKQK

Sequences:

>Translated_268_residues
MKSNSKIKLKHILYIAIILTFIYVPIASLILFSFNKSEGRVASLVNWQGFSWQWYQKLLSDKTIKTSIAITLKIAFLTTI
ISTFLGTFAAISLAQSLNKKWRVMILNASNFSIVVPEIITALSLFVVFGFIRLESSFWKMLLAHISFCTPFVAISVYPKV
ISLDPYCFEAAYDLGATPFKALIKVILPQLKGGMLVGATLAFTLSFDDFIISYFVGGAECQNISAYIYSLKGTINPSVNA
LSTILISLTSFKIIFDFIKQKKMVHKQK
>Mature_268_residues
MKSNSKIKLKHILYIAIILTFIYVPIASLILFSFNKSEGRVASLVNWQGFSWQWYQKLLSDKTIKTSIAITLKIAFLTTI
ISTFLGTFAAISLAQSLNKKWRVMILNASNFSIVVPEIITALSLFVVFGFIRLESSFWKMLLAHISFCTPFVAISVYPKV
ISLDPYCFEAAYDLGATPFKALIKVILPQLKGGMLVGATLAFTLSFDDFIISYFVGGAECQNISAYIYSLKGTINPSVNA
LSTILISLTSFKIIFDFIKQKKMVHKQK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=225, Percent_Identity=35.1111111111111, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787081, Length=263, Percent_Identity=32.319391634981, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787714, Length=242, Percent_Identity=27.6859504132231, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29992; Mature: 29992

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNSKIKLKHILYIAIILTFIYVPIASLILFSFNKSEGRVASLVNWQGFSWQWYQKLLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCCCCHHHHHHHHC
DKTIKTSIAITLKIAFLTTIISTFLGTFAAISLAQSLNKKWRVMILNASNFSIVVPEIIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHHH
ALSLFVVFGFIRLESSFWKMLLAHISFCTPFVAISVYPKVISLDPYCFEAAYDLGATPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCCHHH
ALIKVILPQLKGGMLVGATLAFTLSFDDFIISYFVGGAECQNISAYIYSLKGTINPSVNA
HHHHHHHHHHCCCEEEEEHEEEEECHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCHHH
LSTILISLTSFKIIFDFIKQKKMVHKQK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSNSKIKLKHILYIAIILTFIYVPIASLILFSFNKSEGRVASLVNWQGFSWQWYQKLLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCCCCHHHHHHHHC
DKTIKTSIAITLKIAFLTTIISTFLGTFAAISLAQSLNKKWRVMILNASNFSIVVPEIIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHHH
ALSLFVVFGFIRLESSFWKMLLAHISFCTPFVAISVYPKVISLDPYCFEAAYDLGATPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCCHHH
ALIKVILPQLKGGMLVGATLAFTLSFDDFIISYFVGGAECQNISAYIYSLKGTINPSVNA
HHHHHHHHHHCCCEEEEEHEEEEECHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCHHH
LSTILISLTSFKIIFDFIKQKKMVHKQK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]