| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is norZ [H]
Identifier: 197120262
GI number: 197120262
Start: 4437327
End: 4439618
Strand: Direct
Name: norZ [H]
Synonym: Gbem_3901
Alternate gene names: 197120262
Gene position: 4437327-4439618 (Clockwise)
Preceding gene: 197120260
Following gene: 197120266
Centisome position: 96.15
GC content: 60.34
Gene sequence:
>2292_bases ATGCATGAACGCGAGCAGAACATGGTGCTGGGAAAAGGATGGCTCATCGCCGCTGTCCTCACTTTCATCTTCGGGTTTGC CGTCCTGGGCTACCTCGCCTTCCGGAACAACACGGACGGACCGCCCATACCCCGTGAGGTCAGGACCGCCGACGGGAGGG TACTTTTCACCGGAAACGACATCAAAGAAGGACAGAACCTGTTCCAGAGGTACGGCCTGATGCAGTACGGCACCATCTTC GGGCACGGGGCCTACCTCGGGCCCGATTTCACCGCGCAGTACCTGCGCATAAGCGGGGAAAAAGCCAGGCTCTCCTACAC CGAGCAGAGACTCACCCCGGCAGAGGCGAGCGAGAGGGTGCGCTCCGAGGCAAAACAGAACTCCTACGATCCCGGGCAGA ACGTGATCACCTACACGCCATCCCAGGCAGCGGCTTACGGCGAGATGATCTCCTACTACCGCGACTGGTTCGGCCCGTCT TCGACCCAGCAAGGGCTGCGGCGACCCTACCTGAAAGACCCGGAGGAGGTCCGCAAGCTCACCTCCTATTTTTCCTGGGC AGCCTGGGTCTGCTCCGCGACACGCCCCGGCACTAACCACTCCTATACCAACAACTGGCCCCCCGACAGCCTTGCCGGAA ACCAGCCGACCCCTGGCGTCTTGATGTGGAGCGTGATCAGCCTGGTCGCCCTTCTCTGCGGGACCGGCCTCATCCTCTTC GTGTTCGGCCGCTTCGAGTGGCTGGGATGGCATGCCACGGACACGGAACTTGCCGCTACGCACCCCGTCCCCGAAGAAGT CTCGCTGACTCCGTCGCAGCGTACCGTCACCTGGTATTTCCTGGTGGTTGCCCTGCTCTTTTTGCTACTGGGGCTCCTTG GCGGAGTCAACGCCCACTATCACGTCGAGCGGGCCGGTTTTTACGGGCTCTCGCTTGCCGAATGGCTCCCCTACAACCTT TCCAGGATGTGGCATGTCCAGTTGGCGCTCTTTTTCGTCGCCTCCAGCTTCCTCGCCATGGGGATCTTCCTCACTCCCAT GATCGCCGGCAAAGAGCCGCGGCATCAGGACAAGCTCGCCCTGATCCTTTTGGGGGCGCTGGTAGTGGTCGTATTCGGGT CGATGTCAGGTGAAGCGGTCAGCCTGCAGGGGCTTCTCGGCACCAACAGCCCCTGGTTCTGGATGGGTTCCCAGGGATGG GAATACCTCGACCTCGGGCGCCTCTGGCAGATCCTTTTGACCGCCGGGATGCTGATCTGGTTGCTGATCCTCGTCCGCGG CATGCTGGACCGGTTGAAGGGTGAGCACCCGGGCAACATGCCGTGGCTTTTCATCTACAGCGCCATCTCCATACCTCTTT TCTATGCCGCCGGCATGTTCTACGGTAAGGGGACCCCCTTCAATCAGATCGAGTTCTGGAGGTTCTGGGTGGTCCACCTC TGGGTCGAGGATTTCCTGGAACTCTTCACCACCATCATGGTCGCCTATGTCTTCATGCTGCTCGGCGTGGTCAGGGTGCG GGTGGCAACGACCATCGTCTACCTCGATATCATCCTCTACTCGCTAGGGGGTGTCATCGGGACCATGCACCATCTCTATT TCAGCGGAACTCCCGAGATACACATGGCGCTGGGCGCCTTCTTCTCCGCCATGGAAGTAATCCCCCTGCTGCTCCTCACC TACGAGGCCTGGAAGTTCATGCGGCTCGGAGCACCCGCGGGAGGTTCCATGCTGAGCACAACGGCGGAGATGTTCCCGCA CAAGTGGGCCGTAATGTTCCTGATAGCCGTCGGATTCTGGAACTTCCTCGGGGCGGGGGTCTTCGGTTTCCTTATCAACC TCCCCATCGTCAGCTACTACGAGATCGGCACCCAGTGGACCGCCAATCACGGACACGGCGCGATGATGGGGGTCTACGGG ATGCTTTCTCTCGGGTTCTTCATGTTCGTAGCCCGCTACTTCCTCCCCCTGGACAAGGCGAGCAACACCGCCATGGGCAT CGCCTTCTGGTGCACGAACCTGGGGCTTGCCCTGATGCTGTTTATAAACCTCTTTCCCGTCGGGATGCTGCAGATCAACC AGATCCTCGCCACCTCGTACTGGGAAGGGCGCGAGCCTGCTTTCTTCATGCTCCCCATGGTTCGGATCTTCGAATGGCTG CGGTTGCCCGGCGACGCGCTCTTCATAATAGGCATCTTGCCCGTCGTATATCTCGCCGTCCGCATGTTCCTGAACCGCAA TCGGGGAGTTGTGAGGCCCGCGGAAGAAAAACAGGGGAAAGTAGCCCCCTGA
Upstream 100 bases:
>100_bases ACCCCTTGCAATCGCTTGCATCACCGGGAAGGCAACCTAGAATATCCCGGTAGCGCATTAGAGAAAGCACACAATACGGT TTACAGATCAGGAGGTCGGT
Downstream 100 bases:
>100_bases CCGGCGCGAGAGAGAGAACCGCCCCCGGCTGTGCACCATTTTAAGGCCGGGACCATGGATTCTGCGACAGAACTAAAAAA GGCCGTCCCTAACCAGAGGC
Product: nitric oxide reductase (cytochrome b)
Products: NA
Alternate protein names: NOR large subunit; Nitric oxide reductase cytochrome b subunit [H]
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MHEREQNMVLGKGWLIAAVLTFIFGFAVLGYLAFRNNTDGPPIPREVRTADGRVLFTGNDIKEGQNLFQRYGLMQYGTIF GHGAYLGPDFTAQYLRISGEKARLSYTEQRLTPAEASERVRSEAKQNSYDPGQNVITYTPSQAAAYGEMISYYRDWFGPS STQQGLRRPYLKDPEEVRKLTSYFSWAAWVCSATRPGTNHSYTNNWPPDSLAGNQPTPGVLMWSVISLVALLCGTGLILF VFGRFEWLGWHATDTELAATHPVPEEVSLTPSQRTVTWYFLVVALLFLLLGLLGGVNAHYHVERAGFYGLSLAEWLPYNL SRMWHVQLALFFVASSFLAMGIFLTPMIAGKEPRHQDKLALILLGALVVVVFGSMSGEAVSLQGLLGTNSPWFWMGSQGW EYLDLGRLWQILLTAGMLIWLLILVRGMLDRLKGEHPGNMPWLFIYSAISIPLFYAAGMFYGKGTPFNQIEFWRFWVVHL WVEDFLELFTTIMVAYVFMLLGVVRVRVATTIVYLDIILYSLGGVIGTMHHLYFSGTPEIHMALGAFFSAMEVIPLLLLT YEAWKFMRLGAPAGGSMLSTTAEMFPHKWAVMFLIAVGFWNFLGAGVFGFLINLPIVSYYEIGTQWTANHGHGAMMGVYG MLSLGFFMFVARYFLPLDKASNTAMGIAFWCTNLGLALMLFINLFPVGMLQINQILATSYWEGREPAFFMLPMVRIFEWL RLPGDALFIIGILPVVYLAVRMFLNRNRGVVRPAEEKQGKVAP
Sequences:
>Translated_763_residues MHEREQNMVLGKGWLIAAVLTFIFGFAVLGYLAFRNNTDGPPIPREVRTADGRVLFTGNDIKEGQNLFQRYGLMQYGTIF GHGAYLGPDFTAQYLRISGEKARLSYTEQRLTPAEASERVRSEAKQNSYDPGQNVITYTPSQAAAYGEMISYYRDWFGPS STQQGLRRPYLKDPEEVRKLTSYFSWAAWVCSATRPGTNHSYTNNWPPDSLAGNQPTPGVLMWSVISLVALLCGTGLILF VFGRFEWLGWHATDTELAATHPVPEEVSLTPSQRTVTWYFLVVALLFLLLGLLGGVNAHYHVERAGFYGLSLAEWLPYNL SRMWHVQLALFFVASSFLAMGIFLTPMIAGKEPRHQDKLALILLGALVVVVFGSMSGEAVSLQGLLGTNSPWFWMGSQGW EYLDLGRLWQILLTAGMLIWLLILVRGMLDRLKGEHPGNMPWLFIYSAISIPLFYAAGMFYGKGTPFNQIEFWRFWVVHL WVEDFLELFTTIMVAYVFMLLGVVRVRVATTIVYLDIILYSLGGVIGTMHHLYFSGTPEIHMALGAFFSAMEVIPLLLLT YEAWKFMRLGAPAGGSMLSTTAEMFPHKWAVMFLIAVGFWNFLGAGVFGFLINLPIVSYYEIGTQWTANHGHGAMMGVYG MLSLGFFMFVARYFLPLDKASNTAMGIAFWCTNLGLALMLFINLFPVGMLQINQILATSYWEGREPAFFMLPMVRIFEWL RLPGDALFIIGILPVVYLAVRMFLNRNRGVVRPAEEKQGKVAP >Mature_763_residues MHEREQNMVLGKGWLIAAVLTFIFGFAVLGYLAFRNNTDGPPIPREVRTADGRVLFTGNDIKEGQNLFQRYGLMQYGTIF GHGAYLGPDFTAQYLRISGEKARLSYTEQRLTPAEASERVRSEAKQNSYDPGQNVITYTPSQAAAYGEMISYYRDWFGPS STQQGLRRPYLKDPEEVRKLTSYFSWAAWVCSATRPGTNHSYTNNWPPDSLAGNQPTPGVLMWSVISLVALLCGTGLILF VFGRFEWLGWHATDTELAATHPVPEEVSLTPSQRTVTWYFLVVALLFLLLGLLGGVNAHYHVERAGFYGLSLAEWLPYNL SRMWHVQLALFFVASSFLAMGIFLTPMIAGKEPRHQDKLALILLGALVVVVFGSMSGEAVSLQGLLGTNSPWFWMGSQGW EYLDLGRLWQILLTAGMLIWLLILVRGMLDRLKGEHPGNMPWLFIYSAISIPLFYAAGMFYGKGTPFNQIEFWRFWVVHL WVEDFLELFTTIMVAYVFMLLGVVRVRVATTIVYLDIILYSLGGVIGTMHHLYFSGTPEIHMALGAFFSAMEVIPLLLLT YEAWKFMRLGAPAGGSMLSTTAEMFPHKWAVMFLIAVGFWNFLGAGVFGFLINLPIVSYYEIGTQWTANHGHGAMMGVYG MLSLGFFMFVARYFLPLDKASNTAMGIAFWCTNLGLALMLFINLFPVGMLQINQILATSYWEGREPAFFMLPMVRIFEWL RLPGDALFIIGILPVVYLAVRMFLNRNRGVVRPAEEKQGKVAP
Specific function: Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen red
COG id: COG3256
COG function: function code P; Nitric oxide reductase large subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: =1.7.99.7 [H]
Molecular weight: Translated: 85861; Mature: 85861
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHEREQNMVLGKGWLIAAVLTFIFGFAVLGYLAFRNNTDGPPIPREVRTADGRVLFTGND CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCC IKEGQNLFQRYGLMQYGTIFGHGAYLGPDFTAQYLRISGEKARLSYTEQRLTPAEASERV HHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH RSEAKQNSYDPGQNVITYTPSQAAAYGEMISYYRDWFGPSSTQQGLRRPYLKDPEEVRKL HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHH TSYFSWAAWVCSATRPGTNHSYTNNWPPDSLAGNQPTPGVLMWSVISLVALLCGTGLILF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH VFGRFEWLGWHATDTELAATHPVPEEVSLTPSQRTVTWYFLVVALLFLLLGLLGGVNAHY HHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE HVERAGFYGLSLAEWLPYNLSRMWHVQLALFFVASSFLAMGIFLTPMIAGKEPRHQDKLA EEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LILLGALVVVVFGSMSGEAVSLQGLLGTNSPWFWMGSQGWEYLDLGRLWQILLTAGMLIW HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH LLILVRGMLDRLKGEHPGNMPWLFIYSAISIPLFYAAGMFYGKGTPFNQIEFWRFWVVHL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH WVEDFLELFTTIMVAYVFMLLGVVRVRVATTIVYLDIILYSLGGVIGTMHHLYFSGTPEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH HMALGAFFSAMEVIPLLLLTYEAWKFMRLGAPAGGSMLSTTAEMFPHKWAVMFLIAVGFW HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH NFLGAGVFGFLINLPIVSYYEIGTQWTANHGHGAMMGVYGMLSLGFFMFVARYFLPLDKA HHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC SNTAMGIAFWCTNLGLALMLFINLFPVGMLQINQILATSYWEGREPAFFMLPMVRIFEWL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RLPGDALFIIGILPVVYLAVRMFLNRNRGVVRPAEEKQGKVAP HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC >Mature Secondary Structure MHEREQNMVLGKGWLIAAVLTFIFGFAVLGYLAFRNNTDGPPIPREVRTADGRVLFTGND CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCC IKEGQNLFQRYGLMQYGTIFGHGAYLGPDFTAQYLRISGEKARLSYTEQRLTPAEASERV HHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH RSEAKQNSYDPGQNVITYTPSQAAAYGEMISYYRDWFGPSSTQQGLRRPYLKDPEEVRKL HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHH TSYFSWAAWVCSATRPGTNHSYTNNWPPDSLAGNQPTPGVLMWSVISLVALLCGTGLILF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH VFGRFEWLGWHATDTELAATHPVPEEVSLTPSQRTVTWYFLVVALLFLLLGLLGGVNAHY HHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE HVERAGFYGLSLAEWLPYNLSRMWHVQLALFFVASSFLAMGIFLTPMIAGKEPRHQDKLA EEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LILLGALVVVVFGSMSGEAVSLQGLLGTNSPWFWMGSQGWEYLDLGRLWQILLTAGMLIW HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH LLILVRGMLDRLKGEHPGNMPWLFIYSAISIPLFYAAGMFYGKGTPFNQIEFWRFWVVHL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH WVEDFLELFTTIMVAYVFMLLGVVRVRVATTIVYLDIILYSLGGVIGTMHHLYFSGTPEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH HMALGAFFSAMEVIPLLLLTYEAWKFMRLGAPAGGSMLSTTAEMFPHKWAVMFLIAVGFW HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH NFLGAGVFGFLINLPIVSYYEIGTQWTANHGHGAMMGVYGMLSLGFFMFVARYFLPLDKA HHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC SNTAMGIAFWCTNLGLALMLFINLFPVGMLQINQILATSYWEGREPAFFMLPMVRIFEWL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RLPGDALFIIGILPVVYLAVRMFLNRNRGVVRPAEEKQGKVAP HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7508388; 2542222; 9521721 [H]