| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is paaI [C]
Identifier: 197120259
GI number: 197120259
Start: 4435265
End: 4435672
Strand: Direct
Name: paaI [C]
Synonym: Gbem_3898
Alternate gene names: 197120259
Gene position: 4435265-4435672 (Clockwise)
Preceding gene: 197120258
Following gene: 197120260
Centisome position: 96.1
GC content: 61.27
Gene sequence:
>408_bases ATGGCTAGCAAGATCGATCCGGCGACCGTGGAATCCGGCAGCGCCATATCCATGCTGAAGACGCTGAACATTCACCTGAA GGAGATCGGGCCGACTTTCGCCTTGATGGAGGTGACGGTCTCCGATATCCACAAGAATTACTTTGGCGGAGCGCACGGCG GGCTCATCGCGGCCCTTATCGACACCGTTTCCTTCTTCCCGGAACCGCTGCTCCCCTCCGGCAAGCCATGCACCACCACC AACCTCAACGTCACCTATGTCAGGCCCGCCGCCGTCGGCGACCTGCTGACCGCTCGCGCGGAACTGGTGCACCTGGGACG CAGGATGGCGAGCGTCACGGTGACCGTTTCGAACCAGCATGGCAAACTGGTGGCGCACGGCACAACTACCCTCATGATCG AACCCTAG
Upstream 100 bases:
>100_bases GCCACCCTGCCGTTTTTTTTTGTGCGCAGCATCAGCAAAATGTTTGACGGGCGTGAGGTAAAAGAGTTAAATCACCACCG ACTTAGAGGGAGGGTGCCCA
Downstream 100 bases:
>100_bases CCGTCAACCTCGACTGGAGCCCCGCAGCGTCCGATTCTCCCGGGACTTCTGCAATGTCGTGTCAAATCATCCACCTACTG CAATTTCTACTGTCATCTTC
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MASKIDPATVESGSAISMLKTLNIHLKEIGPTFALMEVTVSDIHKNYFGGAHGGLIAALIDTVSFFPEPLLPSGKPCTTT NLNVTYVRPAAVGDLLTARAELVHLGRRMASVTVTVSNQHGKLVAHGTTTLMIEP
Sequences:
>Translated_135_residues MASKIDPATVESGSAISMLKTLNIHLKEIGPTFALMEVTVSDIHKNYFGGAHGGLIAALIDTVSFFPEPLLPSGKPCTTT NLNVTYVRPAAVGDLLTARAELVHLGRRMASVTVTVSNQHGKLVAHGTTTLMIEP >Mature_134_residues ASKIDPATVESGSAISMLKTLNIHLKEIGPTFALMEVTVSDIHKNYFGGAHGGLIAALIDTVSFFPEPLLPSGKPCTTTN LNVTYVRPAAVGDLLTARAELVHLGRRMASVTVTVSNQHGKLVAHGTTTLMIEP
Specific function: Phenylacetic acid aerobic catabolism. [C]
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14264; Mature: 14133
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKIDPATVESGSAISMLKTLNIHLKEIGPTFALMEVTVSDIHKNYFGGAHGGLIAALI CCCCCCCCCCCCCCCEEEHHHHCEEEECCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHH DTVSFFPEPLLPSGKPCTTTNLNVTYVRPAAVGDLLTARAELVHLGRRMASVTVTVSNQH HHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC GKLVAHGTTTLMIEP CEEEECCCEEEEEEC >Mature Secondary Structure ASKIDPATVESGSAISMLKTLNIHLKEIGPTFALMEVTVSDIHKNYFGGAHGGLIAALI CCCCCCCCCCCCCCEEEHHHHCEEEECCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHH DTVSFFPEPLLPSGKPCTTTNLNVTYVRPAAVGDLLTARAELVHLGRRMASVTVTVSNQH HHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC GKLVAHGTTTLMIEP CEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA