| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119252
Identifier: 197119252
GI number: 197119252
Start: 3317327
End: 3318022
Strand: Direct
Name: 197119252
Synonym: Gbem_2880
Alternate gene names: NA
Gene position: 3317327-3318022 (Clockwise)
Preceding gene: 197119251
Following gene: 197119255
Centisome position: 71.88
GC content: 55.6
Gene sequence:
>696_bases TTGCCGGCGGCTACCAAAACTAAGGCCGATCTATATTACCTCGGTTACTACAACGGCAACGCCGGGTTTGATCAGGGGCA AGCGAAGGAAACCCGCCACTCGGTGGGGGCCAGGCTTTGGCGGGCCGAGAAGCCGCTCGACTACAACTTCGAATTCCTTT ACCAGTGGGGAAGTTTCGGCGACGGCGAGATCAGTGCCTGGACCGCAGCTTCTGATACCGGATACTCAGCTGCAGATCTC CCCTTTTCTCCTCGATTTGGGTTGAAAGCGGATATAACTAGCGGCGATAAGGACCCCAACAACCCCGACCTGCAAACCTT CAACCCGCTGTTCCCGAAAGGCGCCTATTTCAGCGAGAACGGGCTGATCGGTCCCGCCAACTTCATCGATGTCAATCCCT CAGTAGTATTCCACTTCCTAAAAAACCTTACCGTCACTGCCAACTGGGACTTCTTCTGGCGAGAGAGCACGCGTGACGGC ACCTATAACAACGCCGTGGTTCTAGTTCGTTCGGGGAAAAGCAGCTCTGCCCGATACGTAGGGAGCGAGCCGCAGGTACA ATGTGAATGGAACGTGCAACGGCATGTCAGCCTAGTAGCCATTTACGCCCACTTCCTTGCAGGACCCTTCCTGCGGGAGT CGGGGCCTGGCGACGACGTCGATTACTTTACGACCTGGGTCACTTACAAGTTTTGA
Upstream 100 bases:
>100_bases CTGCCGGATAGCGACCCGCCCGGCGCAGACCGACGAACACACATTCGACGACGGCACCGATCACCGTCGGGCCCTTTGGG GTGTCTACTCCGTCTTTCCC
Downstream 100 bases:
>100_bases GCAGAGGGCAGGCAATAAACGAAACCAGGGCAGCTGATCGACTCTCATCTCGACGTATATGAGCAAGAATAAAGACTTGC CCCCCAGGCTCAAGAATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MPAATKTKADLYYLGYYNGNAGFDQGQAKETRHSVGARLWRAEKPLDYNFEFLYQWGSFGDGEISAWTAASDTGYSAADL PFSPRFGLKADITSGDKDPNNPDLQTFNPLFPKGAYFSENGLIGPANFIDVNPSVVFHFLKNLTVTANWDFFWRESTRDG TYNNAVVLVRSGKSSSARYVGSEPQVQCEWNVQRHVSLVAIYAHFLAGPFLRESGPGDDVDYFTTWVTYKF
Sequences:
>Translated_231_residues MPAATKTKADLYYLGYYNGNAGFDQGQAKETRHSVGARLWRAEKPLDYNFEFLYQWGSFGDGEISAWTAASDTGYSAADL PFSPRFGLKADITSGDKDPNNPDLQTFNPLFPKGAYFSENGLIGPANFIDVNPSVVFHFLKNLTVTANWDFFWRESTRDG TYNNAVVLVRSGKSSSARYVGSEPQVQCEWNVQRHVSLVAIYAHFLAGPFLRESGPGDDVDYFTTWVTYKF >Mature_230_residues PAATKTKADLYYLGYYNGNAGFDQGQAKETRHSVGARLWRAEKPLDYNFEFLYQWGSFGDGEISAWTAASDTGYSAADLP FSPRFGLKADITSGDKDPNNPDLQTFNPLFPKGAYFSENGLIGPANFIDVNPSVVFHFLKNLTVTANWDFFWRESTRDGT YNNAVVLVRSGKSSSARYVGSEPQVQCEWNVQRHVSLVAIYAHFLAGPFLRESGPGDDVDYFTTWVTYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25872; Mature: 25741
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAATKTKADLYYLGYYNGNAGFDQGQAKETRHSVGARLWRAEKPLDYNFEFLYQWGSFG CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC DGEISAWTAASDTGYSAADLPFSPRFGLKADITSGDKDPNNPDLQTFNPLFPKGAYFSEN CCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC GLIGPANFIDVNPSVVFHFLKNLTVTANWDFFWRESTRDGTYNNAVVLVRSGKSSSARYV CCCCCCCEEECCHHHHHHHHHCCEEEECCEEEEECCCCCCCCCCEEEEEECCCCCCCEEC GSEPQVQCEWNVQRHVSLVAIYAHFLAGPFLRESGPGDDVDYFTTWVTYKF CCCCCEEEEECHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure PAATKTKADLYYLGYYNGNAGFDQGQAKETRHSVGARLWRAEKPLDYNFEFLYQWGSFG CCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC DGEISAWTAASDTGYSAADLPFSPRFGLKADITSGDKDPNNPDLQTFNPLFPKGAYFSEN CCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC GLIGPANFIDVNPSVVFHFLKNLTVTANWDFFWRESTRDGTYNNAVVLVRSGKSSSARYV CCCCCCCEEECCHHHHHHHHHCCEEEECCEEEEECCCCCCCCCCEEEEEECCCCCCCEEC GSEPQVQCEWNVQRHVSLVAIYAHFLAGPFLRESGPGDDVDYFTTWVTYKF CCCCCEEEEECHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA