| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119251
Identifier: 197119251
GI number: 197119251
Start: 3315800
End: 3316663
Strand: Direct
Name: 197119251
Synonym: Gbem_2878
Alternate gene names: NA
Gene position: 3315800-3316663 (Clockwise)
Preceding gene: 197119250
Following gene: 197119252
Centisome position: 71.85
GC content: 48.61
Gene sequence:
>864_bases ATGGCGCGACCCTTACGCATTGAATTCCCTGGTGCAGTCTACCACCTCACCTCCCGCGGCAACGAACAAAAGAATGTCTT CCGCGACGACAAGGATCGCACGATCTTTCTTGATATTCTGGCAAGATCCTGCAACCTCTTCAACTGGCTCTGTCATGCAT ACTGCCTCATGGGGAACCACTACCACCTTATCGTTGAGACGGTGGATGACACTTTAAGCAGGGGCATGCGGCATCTAAAC GGGGTCTATACTCAGAAATTCAACTGGAATCATCACAGTGTTGGTCATGTTTTCCAAGGAAGGTACAAGGCGATCCTAAT CGAGAAAGAGAGCCATCTCTTAGAAGCCTGCAGATATGTCGTGTTGAATCCAGTAAGGGCAAAGCTCGCTGCAGACCCTG CTCAGTGGCGATGGAGTAGCTACAAAGCGACAAGTGGTCTTGAAAAACCAGCAGCTTGCCTTACAACAGCTTGGATCCTT CAACAGTTTGACCAAAAGCCGACCAGCGCCAACAAAAAATATAGGGAGTTCGTTCAAGACGGTATAAACGCAAGGTCGAT ATGGGAGGACCTCAGGTCGCAGATACTGCTGGGCGATGAGGACTTTGTTGAGCAGTTTAAAGATATAGCAAAGGGAGTAG AGGCATTGACAGAAATCCCGCGCGACCAGCGATTCTTACAGCGCCCAGATCTTCAGGAACTCTTTTCTGGAATTGATAAA GACAACAAAAGGCTGCGAAAAAACGCAGTAATAGAGGCAATAGAAGTGCATGGCTATGCACAGAAGGACGTTGCAGACCA CCTGGGGTTGCACTATTCCACGATCAACCGAATCTTAGGCAATAAACGAAACCAGGACAGCTGA
Upstream 100 bases:
>100_bases ACCCCTCCGCGGCCTGGGGGTCAAGTCTTGTTTATTGCTCATTTTGTGGTTCAATAGGCTTAATAGCAGCTAATGTCACA ACATGTGCGGAGCAATTGCG
Downstream 100 bases:
>100_bases TCGACACTCATCATGAGCAAGAATAAAGACCTGACCCCCAGGCTGCTGATATAACTAGCGGCGATAAGGACCCCAACAAC CCCGACCTGCAAACCTTCAA
Product: transposase of ISGbem_B
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives; Conserved Domain Protein; Transposase Of ISGbem_B; Transposase Family Protein; Transposase And Inactivated Derivatives Protein; Transposase-Like Protein; Transposase Or Inactivated Derivative; Methionine-R-Sulfoxide Reductase; Transposase Domain-Containing Protein
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MARPLRIEFPGAVYHLTSRGNEQKNVFRDDKDRTIFLDILARSCNLFNWLCHAYCLMGNHYHLIVETVDDTLSRGMRHLN GVYTQKFNWNHHSVGHVFQGRYKAILIEKESHLLEACRYVVLNPVRAKLAADPAQWRWSSYKATSGLEKPAACLTTAWIL QQFDQKPTSANKKYREFVQDGINARSIWEDLRSQILLGDEDFVEQFKDIAKGVEALTEIPRDQRFLQRPDLQELFSGIDK DNKRLRKNAVIEAIEVHGYAQKDVADHLGLHYSTINRILGNKRNQDS
Sequences:
>Translated_287_residues MARPLRIEFPGAVYHLTSRGNEQKNVFRDDKDRTIFLDILARSCNLFNWLCHAYCLMGNHYHLIVETVDDTLSRGMRHLN GVYTQKFNWNHHSVGHVFQGRYKAILIEKESHLLEACRYVVLNPVRAKLAADPAQWRWSSYKATSGLEKPAACLTTAWIL QQFDQKPTSANKKYREFVQDGINARSIWEDLRSQILLGDEDFVEQFKDIAKGVEALTEIPRDQRFLQRPDLQELFSGIDK DNKRLRKNAVIEAIEVHGYAQKDVADHLGLHYSTINRILGNKRNQDS >Mature_286_residues ARPLRIEFPGAVYHLTSRGNEQKNVFRDDKDRTIFLDILARSCNLFNWLCHAYCLMGNHYHLIVETVDDTLSRGMRHLNG VYTQKFNWNHHSVGHVFQGRYKAILIEKESHLLEACRYVVLNPVRAKLAADPAQWRWSSYKATSGLEKPAACLTTAWILQ QFDQKPTSANKKYREFVQDGINARSIWEDLRSQILLGDEDFVEQFKDIAKGVEALTEIPRDQRFLQRPDLQELFSGIDKD NKRLRKNAVIEAIEVHGYAQKDVADHLGLHYSTINRILGNKRNQDS
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33266; Mature: 33135
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPLRIEFPGAVYHLTSRGNEQKNVFRDDKDRTIFLDILARSCNLFNWLCHAYCLMGNH CCCCCEEECCCCEEEECCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC YHLIVETVDDTLSRGMRHLNGVYTQKFNWNHHSVGHVFQGRYKAILIEKESHLLEACRYV EEEEEEHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHCCCEEEEEEECHHHHHHHHHHH VLNPVRAKLAADPAQWRWSSYKATSGLEKPAACLTTAWILQQFDQKPTSANKKYREFVQD HHHHHHHHHHCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH GINARSIWEDLRSQILLGDEDFVEQFKDIAKGVEALTEIPRDQRFLQRPDLQELFSGIDK CCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCH DNKRLRKNAVIEAIEVHGYAQKDVADHLGLHYSTINRILGNKRNQDS HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure ARPLRIEFPGAVYHLTSRGNEQKNVFRDDKDRTIFLDILARSCNLFNWLCHAYCLMGNH CCCCEEECCCCEEEECCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC YHLIVETVDDTLSRGMRHLNGVYTQKFNWNHHSVGHVFQGRYKAILIEKESHLLEACRYV EEEEEEHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHCCCEEEEEEECHHHHHHHHHHH VLNPVRAKLAADPAQWRWSSYKATSGLEKPAACLTTAWILQQFDQKPTSANKKYREFVQD HHHHHHHHHHCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH GINARSIWEDLRSQILLGDEDFVEQFKDIAKGVEALTEIPRDQRFLQRPDLQELFSGIDK CCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCH DNKRLRKNAVIEAIEVHGYAQKDVADHLGLHYSTINRILGNKRNQDS HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA