Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197119190

Identifier: 197119190

GI number: 197119190

Start: 3244432

End: 3244890

Strand: Direct

Name: 197119190

Synonym: Gbem_2817

Alternate gene names: NA

Gene position: 3244432-3244890 (Clockwise)

Preceding gene: 197119189

Following gene: 197119217

Centisome position: 70.3

GC content: 62.31

Gene sequence:

>459_bases
ATGAAGAAAAGCGCCGGGCTCGTCATGTACCGCTTCAAAGATGAGCAACTGGAACTTTTCCTGGTGCACCCCGGGGGGCC
TTTCTGGGCCGGGAAAGACGAGGGAGCCTGGTCCATCCCCAAGGGGGAGTACCTCCCCGGCGAGGACCCTTTCGAAGTGG
CCCGGCGCGAGTTTCTGGAGGAGACCGGGCTTGTTGCTGAGGGGGAGTTCCTGGAACTTTCCGAGATCCGGCAGCCCGGC
GGCAAAAAAGTGAAGGCCTGGGCCTTTGCCGGGGACTGCGACCCCTCCGCCATCACCAGCAACACCTTCTCCCTGGAATG
GCCGCCTCGCTCCGGGCGATTTGCCGAGTTCCCCGAGGTGGACCGGGCAGGCTGGTTCGAGTCCGGGGCCGCCAGGGTGA
AGATACTCAAAGGACAGCTGCCGCTAATAGAGGAACTCTGCCTGCTCATCAATTCTTAG

Upstream 100 bases:

>100_bases
AACGCGGTGAACCTCACCGTCTCCGCCGCCACCGTGATAGCCATAAGGTGCGCCGCCCTGGTCAAAGGATGGCAGCTGCC
GCGCGGCCAGGCCCATTGAC

Downstream 100 bases:

>100_bases
GACCAGACCCGCCGCAGCAACCGAAACGACGAAGGCGGCCCCCACACGGGCCGCCTTCTTTACTTCCATCCAGCGCTTCA
CCTCATGCCTCCCTATCGGG

Product: NUDIX hydrolase

Products: NA

Alternate protein names: MutT-Like Protein; MutT/Nudix Family Protein; Phosphohydrolase; NTP Pyrophosphohydrolase Protein; NUDIX Hydrolase Family Protein; MutT/NUDIX Family Protein; NUDIX Domain-Contain Protein; NTP Pyrophosphohydrolase; MutT Protein; Hydrolase NUDIX Family; MutT-Like Domain-Containing Protein; NUDIX Family Protein

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKKSAGLVMYRFKDEQLELFLVHPGGPFWAGKDEGAWSIPKGEYLPGEDPFEVARREFLEETGLVAEGEFLELSEIRQPG
GKKVKAWAFAGDCDPSAITSNTFSLEWPPRSGRFAEFPEVDRAGWFESGAARVKILKGQLPLIEELCLLINS

Sequences:

>Translated_152_residues
MKKSAGLVMYRFKDEQLELFLVHPGGPFWAGKDEGAWSIPKGEYLPGEDPFEVARREFLEETGLVAEGEFLELSEIRQPG
GKKVKAWAFAGDCDPSAITSNTFSLEWPPRSGRFAEFPEVDRAGWFESGAARVKILKGQLPLIEELCLLINS
>Mature_152_residues
MKKSAGLVMYRFKDEQLELFLVHPGGPFWAGKDEGAWSIPKGEYLPGEDPFEVARREFLEETGLVAEGEFLELSEIRQPG
GKKVKAWAFAGDCDPSAITSNTFSLEWPPRSGRFAEFPEVDRAGWFESGAARVKILKGQLPLIEELCLLINS

Specific function: Unknown

COG id: COG4119

COG function: function code LR; Predicted NTP pyrophosphohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16963; Mature: 16963

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAGLVMYRFKDEQLELFLVHPGGPFWAGKDEGAWSIPKGEYLPGEDPFEVARREFLE
CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
ETGLVAEGEFLELSEIRQPGGKKVKAWAFAGDCDPSAITSNTFSLEWPPRSGRFAEFPEV
HCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC
DRAGWFESGAARVKILKGQLPLIEELCLLINS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKSAGLVMYRFKDEQLELFLVHPGGPFWAGKDEGAWSIPKGEYLPGEDPFEVARREFLE
CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
ETGLVAEGEFLELSEIRQPGGKKVKAWAFAGDCDPSAITSNTFSLEWPPRSGRFAEFPEV
HCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC
DRAGWFESGAARVKILKGQLPLIEELCLLINS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA