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The map label for this gene is ubiD-2 [C]

Identifier: 197119033

GI number: 197119033

Start: 3072787

End: 3074628

Strand: Reverse

Name: ubiD-2 [C]

Synonym: Gbem_2656

Alternate gene names: 197119033

Gene position: 3074628-3072787 (Counterclockwise)

Preceding gene: 197119040

Following gene: 197119031

Centisome position: 66.62

GC content: 65.31

Gene sequence:

>1842_bases
TTGGGATATAAGAATCTGGCAGCGTGCGTGGCGGACCTGGAGCGGACGGGCGCTCTGGTCAGGATAAACGAGGAGCTCTC
TTCGGACCTGGAGATCGGGTCCATCCAGCGCAGGGTGTACCAGGCGGGTGGTCCCGCGCTTCTCTTCACCCGGGTGAAGG
GGTGCCCTTTCCCCATGCTCGGAAACCTGTTCGGCACCCTGGAGCGGACCAGGTACATCTTCAGGGATACCCTGAAGGCG
GTCGAACGCCTGGTGCAGTTGAAGATCGATCCTAAATCGGCACTGAAAGACCCCGCTTCCTTGTTGGGCGCGGTCCCGGC
CGCATGGCACCTCCTTCCCAAGGAGGTTGGCGACGGCCCCATTCTCGCCAACCGGACCACCATCGACAAATTGCCGCAGC
TTAAATCCTGGCCGGACGACGGCGGAGCGTTCATCACGCTGCCGCAGGTCTACTCGGAGAGCGCGGCCCAGCCTGGCTTG
CGCCACTCCAACCTCGGCATGTACCGGGTACAGATCTCCGGCGGCGAGTACCGGCAAAACGCCGAGATCGGGGTGCACTA
CCAGATCCATCGCGGCATCGGCTTCCACCATGCCGAGGCGATCGAGCGGGGCGAGCCGTTGCGGGTGAACATCTTCGTGG
GGGGCGCACCCTCCATGACCGTCGCTGCCGTGATGCCCTTGCCCGAGGGGATGCCGGAACTCTCCTTCGCCGGGCTGCTG
GCCGGGCACCGGATCGAGATGGTGCAGCGCCCCGGGCAGCTCCCGATCCCCGCGCAGGCCGACTTCTGCATTACCGGCAT
CATCGACCCCAACAAGACCCTCCCCGAAGGCCCCTTCGGCGACCATTTCGGCTACTACAGCCTGGCGCACCACTTCCCCG
TGCTCCAGGTCGAGGAGGTCTTCCATCGCGACGGGGCCATCTGGCCTTTCACCACGGTGGGGCGCCCTCCGCAGGAGGAC
ACCTCCTTCGGCGCCTTTATTCATGAACTGACCGGCCCCTTAATCCCAACGGTGATACCGGGCGTCAAGGCGGTGCATGC
GGTCGACGCGGCAGGCGTACACCCGCTGCTTTTGGCCATTGGGAGCGAGCGCTACGTCCCCTACGGCGAGCGCCGGACTC
CGCAGGAACTTCTTACCATCGCGAACGCGGTGCTGGGGCAGGGGCAGCTCTCCCTGGCCAAGTACCTGATGATCGCCTCC
CACGAGGACGCGCCGCAGCTCGACATCCACGACATTCCCGCTTTCCTGCGCCATGTGCTGGAGCGGATCGACCTGAAGCG
CGACCTGCATTTCCAGACCGCTACCACCATCGACACCCTCGATTATTCCGGCTCCGGATTGAACAGCGGCTCGAAGGTGG
TATTCGCCGCGGTCGGCGAAAAGCGCCGCACCCTCGGGGTCGAGCTCCCCTCCTCGTTGTGGCTGGCCGACGGCTTCAAT
GACCCATGTATTTGCCTCCCCGGCGTCATCGCCGTCAAGGGGCCTGCCTGCACGGTCCGGAAGGGGGAGGCGGACCCGCA
GATGGAGGCGCTTTGCGCTGCGCTTGAGGGAGTGGAAGGGCTGGAGAGCTTCCCGCTGATCGTTGTCTGCGACGACAGCA
GGTTCGCCGCAAAGCACCTGGACAACTTCCTCTGGGTCACCTTCACCCGTTCCGACCCAGCTGCCGACATCTACGGTGTC
GGGGCCGGCATGGTCTGCAAGCAGTGGGGGTGCACGGGGCCCCTGGTGATCGATGCCAGGGTCAAGCCGCACCACGCGCC
GCCGCTCATCGAGGATCCGGCGGTGGAGCGGAAGCTGGACCAGTTGGCCGCCCCAGGCGGCCCGCTGCATGGGTTGTATT
AG

Upstream 100 bases:

>100_bases
TGCTTCGACCGCTGCCGGGGGGCGTTTTGTGTTGACTTGGCTGCGGGGGTGCTTTAAAAATAGACCGGCTAATTTACAGG
CAAAATCGCGGAGGCGTTGG

Downstream 100 bases:

>100_bases
CTGTTAAAAGCAAAGACACTCACCACAGAGGACCCAATGGACCCAATGGACCCAATGGACCCAATGGACCCAATGGACCC
AATGGACCCAATGGACCCAA

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: 4-hydroxybenzoate DC; HBDC [H]

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MGYKNLAACVADLERTGALVRINEELSSDLEIGSIQRRVYQAGGPALLFTRVKGCPFPMLGNLFGTLERTRYIFRDTLKA
VERLVQLKIDPKSALKDPASLLGAVPAAWHLLPKEVGDGPILANRTTIDKLPQLKSWPDDGGAFITLPQVYSESAAQPGL
RHSNLGMYRVQISGGEYRQNAEIGVHYQIHRGIGFHHAEAIERGEPLRVNIFVGGAPSMTVAAVMPLPEGMPELSFAGLL
AGHRIEMVQRPGQLPIPAQADFCITGIIDPNKTLPEGPFGDHFGYYSLAHHFPVLQVEEVFHRDGAIWPFTTVGRPPQED
TSFGAFIHELTGPLIPTVIPGVKAVHAVDAAGVHPLLLAIGSERYVPYGERRTPQELLTIANAVLGQGQLSLAKYLMIAS
HEDAPQLDIHDIPAFLRHVLERIDLKRDLHFQTATTIDTLDYSGSGLNSGSKVVFAAVGEKRRTLGVELPSSLWLADGFN
DPCICLPGVIAVKGPACTVRKGEADPQMEALCAALEGVEGLESFPLIVVCDDSRFAAKHLDNFLWVTFTRSDPAADIYGV
GAGMVCKQWGCTGPLVIDARVKPHHAPPLIEDPAVERKLDQLAAPGGPLHGLY

Sequences:

>Translated_613_residues
MGYKNLAACVADLERTGALVRINEELSSDLEIGSIQRRVYQAGGPALLFTRVKGCPFPMLGNLFGTLERTRYIFRDTLKA
VERLVQLKIDPKSALKDPASLLGAVPAAWHLLPKEVGDGPILANRTTIDKLPQLKSWPDDGGAFITLPQVYSESAAQPGL
RHSNLGMYRVQISGGEYRQNAEIGVHYQIHRGIGFHHAEAIERGEPLRVNIFVGGAPSMTVAAVMPLPEGMPELSFAGLL
AGHRIEMVQRPGQLPIPAQADFCITGIIDPNKTLPEGPFGDHFGYYSLAHHFPVLQVEEVFHRDGAIWPFTTVGRPPQED
TSFGAFIHELTGPLIPTVIPGVKAVHAVDAAGVHPLLLAIGSERYVPYGERRTPQELLTIANAVLGQGQLSLAKYLMIAS
HEDAPQLDIHDIPAFLRHVLERIDLKRDLHFQTATTIDTLDYSGSGLNSGSKVVFAAVGEKRRTLGVELPSSLWLADGFN
DPCICLPGVIAVKGPACTVRKGEADPQMEALCAALEGVEGLESFPLIVVCDDSRFAAKHLDNFLWVTFTRSDPAADIYGV
GAGMVCKQWGCTGPLVIDARVKPHHAPPLIEDPAVERKLDQLAAPGGPLHGLY
>Mature_612_residues
GYKNLAACVADLERTGALVRINEELSSDLEIGSIQRRVYQAGGPALLFTRVKGCPFPMLGNLFGTLERTRYIFRDTLKAV
ERLVQLKIDPKSALKDPASLLGAVPAAWHLLPKEVGDGPILANRTTIDKLPQLKSWPDDGGAFITLPQVYSESAAQPGLR
HSNLGMYRVQISGGEYRQNAEIGVHYQIHRGIGFHHAEAIERGEPLRVNIFVGGAPSMTVAAVMPLPEGMPELSFAGLLA
GHRIEMVQRPGQLPIPAQADFCITGIIDPNKTLPEGPFGDHFGYYSLAHHFPVLQVEEVFHRDGAIWPFTTVGRPPQEDT
SFGAFIHELTGPLIPTVIPGVKAVHAVDAAGVHPLLLAIGSERYVPYGERRTPQELLTIANAVLGQGQLSLAKYLMIASH
EDAPQLDIHDIPAFLRHVLERIDLKRDLHFQTATTIDTLDYSGSGLNSGSKVVFAAVGEKRRTLGVELPSSLWLADGFND
PCICLPGVIAVKGPACTVRKGEADPQMEALCAALEGVEGLESFPLIVVCDDSRFAAKHLDNFLWVTFTRSDPAADIYGVG
AGMVCKQWGCTGPLVIDARVKPHHAPPLIEDPAVERKLDQLAAPGGPLHGLY

Specific function: Catalyzes the reversible decarboxylation of 4- hydroxybenzoate [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=484, Percent_Identity=27.8925619834711, Blast_Score=177, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6320748, Length=342, Percent_Identity=24.8538011695906, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: =4.1.1.61 [H]

Molecular weight: Translated: 66398; Mature: 66267

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYKNLAACVADLERTGALVRINEELSSDLEIGSIQRRVYQAGGPALLFTRVKGCPFPML
CCHHHHHHHHHHHHHCCCEEEECHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHH
GNLFGTLERTRYIFRDTLKAVERLVQLKIDPKSALKDPASLLGAVPAAWHLLPKEVGDGP
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
ILANRTTIDKLPQLKSWPDDGGAFITLPQVYSESAAQPGLRHSNLGMYRVQISGGEYRQN
EEECCCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
AEIGVHYQIHRGIGFHHAEAIERGEPLRVNIFVGGAPSMTVAAVMPLPEGMPELSFAGLL
CCEEEEEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHH
AGHRIEMVQRPGQLPIPAQADFCITGIIDPNKTLPEGPFGDHFGYYSLAHHFPVLQVEEV
HCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH
FHRDGAIWPFTTVGRPPQEDTSFGAFIHELTGPLIPTVIPGVKAVHAVDAAGVHPLLLAI
HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCEEEEEE
GSERYVPYGERRTPQELLTIANAVLGQGQLSLAKYLMIASHEDAPQLDIHDIPAFLRHVL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ERIDLKRDLHFQTATTIDTLDYSGSGLNSGSKVVFAAVGEKRRTLGVELPSSLWLADGFN
HHHCCHHCCCEEEECEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCC
DPCICLPGVIAVKGPACTVRKGEADPQMEALCAALEGVEGLESFPLIVVCDDSRFAAKHL
CCCEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCHHHCCEEEEECCCCHHHHHC
DNFLWVTFTRSDPAADIYGVGAGMVCKQWGCTGPLVIDARVKPHHAPPLIEDPAVERKLD
CCEEEEEEECCCCCCCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHH
QLAAPGGPLHGLY
HHCCCCCCCCCCC
>Mature Secondary Structure 
GYKNLAACVADLERTGALVRINEELSSDLEIGSIQRRVYQAGGPALLFTRVKGCPFPML
CHHHHHHHHHHHHHCCCEEEECHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHH
GNLFGTLERTRYIFRDTLKAVERLVQLKIDPKSALKDPASLLGAVPAAWHLLPKEVGDGP
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
ILANRTTIDKLPQLKSWPDDGGAFITLPQVYSESAAQPGLRHSNLGMYRVQISGGEYRQN
EEECCCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
AEIGVHYQIHRGIGFHHAEAIERGEPLRVNIFVGGAPSMTVAAVMPLPEGMPELSFAGLL
CCEEEEEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHH
AGHRIEMVQRPGQLPIPAQADFCITGIIDPNKTLPEGPFGDHFGYYSLAHHFPVLQVEEV
HCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH
FHRDGAIWPFTTVGRPPQEDTSFGAFIHELTGPLIPTVIPGVKAVHAVDAAGVHPLLLAI
HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCEEEEEE
GSERYVPYGERRTPQELLTIANAVLGQGQLSLAKYLMIASHEDAPQLDIHDIPAFLRHVL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ERIDLKRDLHFQTATTIDTLDYSGSGLNSGSKVVFAAVGEKRRTLGVELPSSLWLADGFN
HHHCCHHCCCEEEECEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCC
DPCICLPGVIAVKGPACTVRKGEADPQMEALCAALEGVEGLESFPLIVVCDDSRFAAKHL
CCCEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCHHHCCEEEEECCCCHHHHHC
DNFLWVTFTRSDPAADIYGVGAGMVCKQWGCTGPLVIDARVKPHHAPPLIEDPAVERKLD
CCEEEEEEECCCCCCCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHH
QLAAPGGPLHGLY
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]