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The map label for this gene is yqxC [H]

Identifier: 197119031

GI number: 197119031

Start: 3071803

End: 3072576

Strand: Reverse

Name: yqxC [H]

Synonym: Gbem_2654

Alternate gene names: 197119031

Gene position: 3072576-3071803 (Counterclockwise)

Preceding gene: 197119033

Following gene: 197119030

Centisome position: 66.58

GC content: 65.37

Gene sequence:

>774_bases
TTGACCAAGGAAAGACTCGACAAGCTGGTGCTGGAACGGGGGCTCGCCCCTTCCAGGGAGCGGGCCAAGGCGCTCATCAT
GGCGGGGCAGGTGGTGGTGGACGACCACTTGGCCGACAAGGCGGGGCTCATGGTCCCGGTCGAGGCCGAGATCCGTCTCA
AGGGGGAGCCACTTCCCTATGTGAGCCGCGGGGGGCTGAAGCTCGCCGAGGGGCTGGAGCGCTTCGGCATCGTTGTCGCC
GGACTCTGCGCCATCGACGTGGGCGCCTCGACTGGAGGCTTCACCGACTGCCTGCTGCAAAGGGGCGCTACCCGCGTCTA
TGCGGTCGACGTCGGCTACGGGCAACTGGCCTGGAAGCTGCGCGAGGACTCGCGGGTGGTGAGCATGGAGAAGACCAATA
TCCGCCACCTGGAGCCGGGGATGCTCCCGGAATCCCCGGACCTGGCGGTGATCGATGCTTCGTTCATCTCGCTGGACAAG
GTGCTTCCGCCGACGCTGAGGCTGATCAAGCCTGACGGCGTCGTGGTCGCGCTCATCAAGCCGCAGTTCGAGGTGGGACG
CGGCCAGGTGGGGAAGGGCGGGGTGGTCAGGGACGAGAAGAAGCACCAGGAGGTGGTGGAGAGCATCGGCGAGCTGGCCA
GGGGACTGGGGCTCAAGGTACTGGGAGTGTGCGATTCCCCTATCCTCGGACCCAAGGGGAACAAGGAGTTCCTGATCCAT
CTGCAAAAGCAGGGGGACCTGCAACCCCGGAACACAGAGGTCCCTGAGGAATAG

Upstream 100 bases:

>100_bases
GGACCCAATGGACCCAATGGACCCAATGGACCCAATGGACCCAATGGACCAGGGGTGAAAGCTTTTGTTTGAGCTTTTAG
TTTTTTGATTTGAGGTTCAT

Downstream 100 bases:

>100_bases
CCACAGCGGTCACAGAGGAAACGCGGAAATGTTTGAAACCAACCCGGAGCTCTCTTCCTCTCTCAGATTCTCTCTCTGGC
TAAAGGTTTTGGAGTTTGAC

Product: rRNA methyltransferase, YqxC-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTKERLDKLVLERGLAPSRERAKALIMAGQVVVDDHLADKAGLMVPVEAEIRLKGEPLPYVSRGGLKLAEGLERFGIVVA
GLCAIDVGASTGGFTDCLLQRGATRVYAVDVGYGQLAWKLREDSRVVSMEKTNIRHLEPGMLPESPDLAVIDASFISLDK
VLPPTLRLIKPDGVVVALIKPQFEVGRGQVGKGGVVRDEKKHQEVVESIGELARGLGLKVLGVCDSPILGPKGNKEFLIH
LQKQGDLQPRNTEVPEE

Sequences:

>Translated_257_residues
MTKERLDKLVLERGLAPSRERAKALIMAGQVVVDDHLADKAGLMVPVEAEIRLKGEPLPYVSRGGLKLAEGLERFGIVVA
GLCAIDVGASTGGFTDCLLQRGATRVYAVDVGYGQLAWKLREDSRVVSMEKTNIRHLEPGMLPESPDLAVIDASFISLDK
VLPPTLRLIKPDGVVVALIKPQFEVGRGQVGKGGVVRDEKKHQEVVESIGELARGLGLKVLGVCDSPILGPKGNKEFLIH
LQKQGDLQPRNTEVPEE
>Mature_256_residues
TKERLDKLVLERGLAPSRERAKALIMAGQVVVDDHLADKAGLMVPVEAEIRLKGEPLPYVSRGGLKLAEGLERFGIVVAG
LCAIDVGASTGGFTDCLLQRGATRVYAVDVGYGQLAWKLREDSRVVSMEKTNIRHLEPGMLPESPDLAVIDASFISLDKV
LPPTLRLIKPDGVVVALIKPQFEVGRGQVGKGGVVRDEKKHQEVVESIGELARGLGLKVLGVCDSPILGPKGNKEFLIHL
QKQGDLQPRNTEVPEE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27776; Mature: 27645

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKERLDKLVLERGLAPSRERAKALIMAGQVVVDDHLADKAGLMVPVEAEIRLKGEPLPY
CCHHHHHHHHHHHCCCCCHHHHHHHEEECEEEEECCCCCCCCEEEEECEEEEECCCCCCC
VSRGGLKLAEGLERFGIVVAGLCAIDVGASTGGFTDCLLQRGATRVYAVDVGYGQLAWKL
CCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEE
REDSRVVSMEKTNIRHLEPGMLPESPDLAVIDASFISLDKVLPPTLRLIKPDGVVVALIK
CCCCEEEEEECCCCEECCCCCCCCCCCEEEEEHHHHHHHHCCCCHHEEECCCCEEEEEEC
PQFEVGRGQVGKGGVVRDEKKHQEVVESIGELARGLGLKVLGVCDSPILGPKGNKEFLIH
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEE
LQKQGDLQPRNTEVPEE
EECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKERLDKLVLERGLAPSRERAKALIMAGQVVVDDHLADKAGLMVPVEAEIRLKGEPLPY
CHHHHHHHHHHHCCCCCHHHHHHHEEECEEEEECCCCCCCCEEEEECEEEEECCCCCCC
VSRGGLKLAEGLERFGIVVAGLCAIDVGASTGGFTDCLLQRGATRVYAVDVGYGQLAWKL
CCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEE
REDSRVVSMEKTNIRHLEPGMLPESPDLAVIDASFISLDKVLPPTLRLIKPDGVVVALIK
CCCCEEEEEECCCCEECCCCCCCCCCCEEEEEHHHHHHHHCCCCHHEEECCCCEEEEEEC
PQFEVGRGQVGKGGVVRDEKKHQEVVESIGELARGLGLKVLGVCDSPILGPKGNKEFLIH
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEE
LQKQGDLQPRNTEVPEE
EECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]