Click here to switch to the map view.

The map label for this gene is spsL [H]

Identifier: 197118840

GI number: 197118840

Start: 2852576

End: 2853064

Strand: Reverse

Name: spsL [H]

Synonym: Gbem_2463

Alternate gene names: 197118840

Gene position: 2853064-2852576 (Counterclockwise)

Preceding gene: 197118841

Following gene: 197118839

Centisome position: 61.82

GC content: 63.6

Gene sequence:

>489_bases
ATGAGCGGGATAACCAGTTTCACCAAGGGGCGTATCCACGACGTGGTGCTTAAGCCGCTGGGGAAGTTCCTGGACGAGCG
GGGGTGGCTTTGCGAGCTTTTCCGCAGCGACGAGCTGGAGCAGTCGGTGCTTCCCGCCATGACCTATGTCTCGATGACCC
AGCCGGGGGTGACCCGCGGGCCCCACGAGCACGTCGACCAGACCGACTACTTCTGCTTCATGGGTCCTTCAAACTTCAAG
GTCTACCTTTGGGACACGCGCCCCGACTCCCCGAGCCGCGGAGTCAGGCAGGTGGTCTACGCCGGCCTCGACGCTCCGCT
GGCCATGATAGTTCCGCCCGGAGTGGTTCATGCCTACCGCAACGTAGGGACGGAGAACGGCATCGTCTTCAACGCGCCGA
ACCGGCTCTATGCCGGAGAGGGAAAGCGCGAGCCGGTGGACGAGATCCGGCACGAAGAAGCGGCCGGCTCGCCTTACCAG
ATCGACTAG

Upstream 100 bases:

>100_bases
CGATGGCCAAGGTCATCGATGCCACCCCCAACTCCTCGTATCGGGACTATCTGGTGCGGGTTTACAACGAGACTACGCTT
TGCGGGGGAGGGATGGGAGC

Downstream 100 bases:

>100_bases
CGGTGTCGCTGCCCGTTGTTTTTTGATCGCACAGATAGGGGGCCGCAGTGCCCCCTAAACCATTTTGAGGCCGATGAAAA
ACTTTCTAATCCGCTATAAG

Product: nucleoside diphosphate-sugar dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSGITSFTKGRIHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAMTYVSMTQPGVTRGPHEHVDQTDYFCFMGPSNFK
VYLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAYRNVGTENGIVFNAPNRLYAGEGKREPVDEIRHEEAAGSPYQ
ID

Sequences:

>Translated_162_residues
MSGITSFTKGRIHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAMTYVSMTQPGVTRGPHEHVDQTDYFCFMGPSNFK
VYLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAYRNVGTENGIVFNAPNRLYAGEGKREPVDEIRHEEAAGSPYQ
ID
>Mature_161_residues
SGITSFTKGRIHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAMTYVSMTQPGVTRGPHEHVDQTDYFCFMGPSNFKV
YLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAYRNVGTENGIVFNAPNRLYAGEGKREPVDEIRHEEAAGSPYQI
D

Specific function: Unknown

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To dTDP-4-dehydrorhamnose reductase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: NA

Molecular weight: Translated: 18113; Mature: 17982

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGITSFTKGRIHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAMTYVSMTQPGVTRG
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
PHEHVDQTDYFCFMGPSNFKVYLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAYR
CHHCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
NVGTENGIVFNAPNRLYAGEGKREPVDEIRHEEAAGSPYQID
HCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SGITSFTKGRIHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAMTYVSMTQPGVTRG
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
PHEHVDQTDYFCFMGPSNFKVYLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAYR
CHHCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
NVGTENGIVFNAPNRLYAGEGKREPVDEIRHEEAAGSPYQID
HCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]