| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118803
Identifier: 197118803
GI number: 197118803
Start: 2811684
End: 2812859
Strand: Reverse
Name: 197118803
Synonym: Gbem_2424
Alternate gene names: NA
Gene position: 2812859-2811684 (Counterclockwise)
Preceding gene: 197118804
Following gene: 197118802
Centisome position: 60.95
GC content: 65.73
Gene sequence:
>1176_bases ATGGACCATGAACTGCTGGCGGAGTGCTACCGCGAGGCGCTGGCGCTTTTGCGGGAAAATTCCACGCCGGCCGGCATCCT TGCCTCGGGGAGGAACCAGAGGTCCGAGGGGCGCAACTATACCAGCATCTTCGGCCGCGACGCTTCCATCTGCGCTTTGG GGATGGCGGTGTCGGGAGACGAGGAGTTGCGGCGCATAGCGGCAGAGGGGCTTCTGACCCTGGCCCGGTACCAGGCCGGC AACGGCCAGATACCGAAGTACGTGAAGCCGGAGCTGGGGGAGGCTGACTTCTGGTACTCCGGCTGCATCGACGCCACCTT GTGGTGGCTCATCGCCATTCGCTTCGTGGACCGCGTTCTTCCCGAAGGTGGGCTTGGAGCGCGGCTCGCCCCTCAGACCG ACCTCGCCCTTTCCTGGCTCCAGTGCCAGGAACACCAGGTCTGGCGCCTGCTGCAGCAGCTGGACGCAAGCGACTGGGCC GACATCATGCCGCGGGCGGGTTACGTCCTCTACACCAACGTCCTTTGGTACTGGACCAAGACCCTCTACGGCCTCCCCTG CGCGGCAGAGACGAAAGAGTACCTGAACACGCTCCTTTCCCCCTTTGGCCGAGTGGTCCCTACACACAAGCGCGCCCGCC TGCTGGTCCACTACATCCGCAACCGCTGCAAGCCTTCCCCCTTTTATCTCAGCTTCGTCAACTTCTCCGACTGGGGCGAG GAGATCGACATCTTCGGAAACATCATGGCGCACCTGCTCGGGGTGAGCCCCCCCTCCACCGGCGACAAGGCGGTCGAAGC GATCTTGGCCCTGAAGGCGAACCAGCCGCACCCCGTCAGGGTGGTGGGAGACCCGATCCGGCCCGGCTCCAGGCTTTGGC GCCCCTACATGCAGCGCCACCGGCAGAACCTCGCCTGGCAGTACCATAACGGCGGCGCCTGGCCCTTCGTCGGGGGATTC TGGGTGCTGCTCCTGGCGCGCCTGGGGCGGACCAGGCAGGCGTGGTCCGAGCTGGAGAAGCTGGCCCGCTCCAACCGGGT GAACGGTTGGGAATTCAACGAATGGTTCCAGGGGGAGACGGGCGAGCCTATGGGCATGCCCCGGCAGTCCTGGAACGCCT CTCTCTACGTCCTCGCCTACCGCACCCTCGCCGACGGCACGCGCTACCTCCCCTGA
Upstream 100 bases:
>100_bases ACCACATCCTGTTGGTGCGGGTGAAAAAGGGTAGGGCGAGTTACCGGATGGTGCCGCTTAAGGGGTGACTTTTACTGCCG CTGGAGAAGAGGGAAAGGCG
Downstream 100 bases:
>100_bases ACCCTCGCCGCGATCCTTAATAATTTTCTAGGAGAGGGTGGCTTTTCCTCCAGGTCATGATTATTATTGTGCTCATGATA ATCAAGGAGGATGAAAACAT
Product: glycoside hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MDHELLAECYREALALLRENSTPAGILASGRNQRSEGRNYTSIFGRDASICALGMAVSGDEELRRIAAEGLLTLARYQAG NGQIPKYVKPELGEADFWYSGCIDATLWWLIAIRFVDRVLPEGGLGARLAPQTDLALSWLQCQEHQVWRLLQQLDASDWA DIMPRAGYVLYTNVLWYWTKTLYGLPCAAETKEYLNTLLSPFGRVVPTHKRARLLVHYIRNRCKPSPFYLSFVNFSDWGE EIDIFGNIMAHLLGVSPPSTGDKAVEAILALKANQPHPVRVVGDPIRPGSRLWRPYMQRHRQNLAWQYHNGGAWPFVGGF WVLLLARLGRTRQAWSELEKLARSNRVNGWEFNEWFQGETGEPMGMPRQSWNASLYVLAYRTLADGTRYLP
Sequences:
>Translated_391_residues MDHELLAECYREALALLRENSTPAGILASGRNQRSEGRNYTSIFGRDASICALGMAVSGDEELRRIAAEGLLTLARYQAG NGQIPKYVKPELGEADFWYSGCIDATLWWLIAIRFVDRVLPEGGLGARLAPQTDLALSWLQCQEHQVWRLLQQLDASDWA DIMPRAGYVLYTNVLWYWTKTLYGLPCAAETKEYLNTLLSPFGRVVPTHKRARLLVHYIRNRCKPSPFYLSFVNFSDWGE EIDIFGNIMAHLLGVSPPSTGDKAVEAILALKANQPHPVRVVGDPIRPGSRLWRPYMQRHRQNLAWQYHNGGAWPFVGGF WVLLLARLGRTRQAWSELEKLARSNRVNGWEFNEWFQGETGEPMGMPRQSWNASLYVLAYRTLADGTRYLP >Mature_391_residues MDHELLAECYREALALLRENSTPAGILASGRNQRSEGRNYTSIFGRDASICALGMAVSGDEELRRIAAEGLLTLARYQAG NGQIPKYVKPELGEADFWYSGCIDATLWWLIAIRFVDRVLPEGGLGARLAPQTDLALSWLQCQEHQVWRLLQQLDASDWA DIMPRAGYVLYTNVLWYWTKTLYGLPCAAETKEYLNTLLSPFGRVVPTHKRARLLVHYIRNRCKPSPFYLSFVNFSDWGE EIDIFGNIMAHLLGVSPPSTGDKAVEAILALKANQPHPVRVVGDPIRPGSRLWRPYMQRHRQNLAWQYHNGGAWPFVGGF WVLLLARLGRTRQAWSELEKLARSNRVNGWEFNEWFQGETGEPMGMPRQSWNASLYVLAYRTLADGTRYLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44471; Mature: 44471
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHELLAECYREALALLRENSTPAGILASGRNQRSEGRNYTSIFGRDASICALGMAVSGD CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCCCCHHHHCCCCCHHEEEEECCCH EELRRIAAEGLLTLARYQAGNGQIPKYVKPELGEADFWYSGCIDATLWWLIAIRFVDRVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC PEGGLGARLAPQTDLALSWLQCQEHQVWRLLQQLDASDWADIMPRAGYVLYTNVLWYWTK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH TLYGLPCAAETKEYLNTLLSPFGRVVPTHKRARLLVHYIRNRCKPSPFYLSFVNFSDWGE HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCH EIDIFGNIMAHLLGVSPPSTGDKAVEAILALKANQPHPVRVVGDPIRPGSRLWRPYMQRH HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHH RQNLAWQYHNGGAWPFVGGFWVLLLARLGRTRQAWSELEKLARSNRVNGWEFNEWFQGET HHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GEPMGMPRQSWNASLYVLAYRTLADGTRYLP CCCCCCCCCCCCCEEEEEEEHHHHCCCCCCC >Mature Secondary Structure MDHELLAECYREALALLRENSTPAGILASGRNQRSEGRNYTSIFGRDASICALGMAVSGD CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCCCCHHHHCCCCCHHEEEEECCCH EELRRIAAEGLLTLARYQAGNGQIPKYVKPELGEADFWYSGCIDATLWWLIAIRFVDRVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC PEGGLGARLAPQTDLALSWLQCQEHQVWRLLQQLDASDWADIMPRAGYVLYTNVLWYWTK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH TLYGLPCAAETKEYLNTLLSPFGRVVPTHKRARLLVHYIRNRCKPSPFYLSFVNFSDWGE HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCH EIDIFGNIMAHLLGVSPPSTGDKAVEAILALKANQPHPVRVVGDPIRPGSRLWRPYMQRH HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHH RQNLAWQYHNGGAWPFVGGFWVLLLARLGRTRQAWSELEKLARSNRVNGWEFNEWFQGET HHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GEPMGMPRQSWNASLYVLAYRTLADGTRYLP CCCCCCCCCCCCCEEEEEEEHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA