| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is pyrE [H]
Identifier: 197118709
GI number: 197118709
Start: 2700224
End: 2700772
Strand: Reverse
Name: pyrE [H]
Synonym: Gbem_2328
Alternate gene names: 197118709
Gene position: 2700772-2700224 (Counterclockwise)
Preceding gene: 197118710
Following gene: 197118708
Centisome position: 58.52
GC content: 60.84
Gene sequence:
>549_bases ATGAGCGAGAAGGAAAGGCTGAAGAAGATCATCATAGAGCTGTCCTACGAGAAGAGGAACGTCACCCTGGCCTCCGGTCG CCAGAGCGATTTCTACTTTGACGGCAAGCAGACCACGCTGCACCCGGAAGGTGGCTACCTCACCGGCAAGCTCTTCTTCG ACGCGATCAAAGACGTCGAAGGGGTGGAAGGGGTAGGGGGGCTCACCCTCGGCGCCGACCCGATCGCGACCGCCACCTCC ATCGCCAGCTTCCTGGCGGGGAAACCGGTTCCCGGCTTCATCATCAGGAAGGAGCCCAAAGGTCACGGTACCGGCGCCTG GCTGGAAGGAAGGAAGAACCTGAAGCCCGGCTCCAAGGTCGTCATCGTCGAGGACGTCGTCACCAGCGGCGGTTCCTCCA TCAAGGCGATCAAGCGCGCCGAAGAGGAAGGGCTTGTGGTTCTGGGTGTAGTCACCCTGGTCGACCGTGAAGAAGGGGGC CGCGAGAACATCGAGGCCGAAGGGTACTGGCTCAAGTCCATCTTCACCAAGTCCGAGATCCTTGCCTAA
Upstream 100 bases:
>100_bases GCACTGCCTGCTTCACCGGGGGCTACCCGGTAAAATTCCCGCGGCTTCTCGACCAGGACGAGCCGCAGATGGGGCTATTC GAAAAGGAGATCGAGAAATA
Downstream 100 bases:
>100_bases CAAACGGTAGATAGTATTTCACCGAAGGCGGCAATGAAACTATTGCCGCCTTTGTTTTTAGACAAATGCGAACTGCGGAA CACAGAGGTCCCGGAGGTTC
Product: orotate phosphoribosyltransferase
Products: NA
Alternate protein names: OPRT; OPRTase [H]
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSEKERLKKIIIELSYEKRNVTLASGRQSDFYFDGKQTTLHPEGGYLTGKLFFDAIKDVEGVEGVGGLTLGADPIATATS IASFLAGKPVPGFIIRKEPKGHGTGAWLEGRKNLKPGSKVVIVEDVVTSGGSSIKAIKRAEEEGLVVLGVVTLVDREEGG RENIEAEGYWLKSIFTKSEILA
Sequences:
>Translated_182_residues MSEKERLKKIIIELSYEKRNVTLASGRQSDFYFDGKQTTLHPEGGYLTGKLFFDAIKDVEGVEGVGGLTLGADPIATATS IASFLAGKPVPGFIIRKEPKGHGTGAWLEGRKNLKPGSKVVIVEDVVTSGGSSIKAIKRAEEEGLVVLGVVTLVDREEGG RENIEAEGYWLKSIFTKSEILA >Mature_181_residues SEKERLKKIIIELSYEKRNVTLASGRQSDFYFDGKQTTLHPEGGYLTGKLFFDAIKDVEGVEGVGGLTLGADPIATATSI ASFLAGKPVPGFIIRKEPKGHGTGAWLEGRKNLKPGSKVVIVEDVVTSGGSSIKAIKRAEEEGLVVLGVVTLVDREEGGR ENIEAEGYWLKSIFTKSEILA
Specific function: Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) [H]
COG id: COG0461
COG function: function code F; Orotate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily [H]
Homologues:
Organism=Homo sapiens, GI4507835, Length=163, Percent_Identity=32.5153374233129, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17554964, Length=164, Percent_Identity=35.3658536585366, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI17933654, Length=157, Percent_Identity=36.3057324840764, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004467 - InterPro: IPR023031 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.4.2.10 [H]
Molecular weight: Translated: 19609; Mature: 19477
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKERLKKIIIELSYEKRNVTLASGRQSDFYFDGKQTTLHPEGGYLTGKLFFDAIKDVE CCHHHHHHHHHHHEECCCCEEEEECCCCCCEEECCCCEEECCCCCEEEHHHHHHHHHHCC GVEGVGGLTLGADPIATATSIASFLAGKPVPGFIIRKEPKGHGTGAWLEGRKNLKPGSKV CCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCEE VIVEDVVTSGGSSIKAIKRAEEEGLVVLGVVTLVDREEGGRENIEAEGYWLKSIFTKSEI EEEEEHHHCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHH LA CC >Mature Secondary Structure SEKERLKKIIIELSYEKRNVTLASGRQSDFYFDGKQTTLHPEGGYLTGKLFFDAIKDVE CHHHHHHHHHHHEECCCCEEEEECCCCCCEEECCCCEEECCCCCEEEHHHHHHHHHHCC GVEGVGGLTLGADPIATATSIASFLAGKPVPGFIIRKEPKGHGTGAWLEGRKNLKPGSKV CCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCEE VIVEDVVTSGGSSIKAIKRAEEEGLVVLGVVTLVDREEGGRENIEAEGYWLKSIFTKSEI EEEEEHHHCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHH LA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA