| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118268
Identifier: 197118268
GI number: 197118268
Start: 2184255
End: 2185364
Strand: Direct
Name: 197118268
Synonym: Gbem_1885
Alternate gene names: NA
Gene position: 2184255-2185364 (Clockwise)
Preceding gene: 197118263
Following gene: 197118269
Centisome position: 47.33
GC content: 64.68
Gene sequence:
>1110_bases ATGGCGGCTCATTCAGATGTGATACCAAGCTATACCGCGCCGGATTTCCGCCGGCCCAAGCTGGCCGACGCCCCGGCGGC GCGCACGATCCCGGCTCCCGGGGATGGGGTGCTGCCGCAAAACTACCACGCCACCTCGAACCATCCCGAATACGTGCACC TGGGTGGAGGTGAGTGGCTCCTCGCGCCTCAAAGCCGCATGGACTGCGTGATCGTACTCAAGGGAAGGGTTCCGGAGGTG GTCGAGCCGCGTCGCGTGCGGCGCGGCGACCCGGTCGTGGTGGGTAGGACGGAAAACGGCGAAGAGGGGATCTACCTCCA CATCGGGGGCTTCCTGAACCTGGCCGAGCCCTTCGCCGACAAGTTCTCCTTTCGCAGCCGCGGCACCCGCGAGACCCCCT TTTCCCGCTCCTACGACGAGTTGTACCAGGTGCTGCGCCACGACCGGGACCACGGCTACATCGTCTGGGTCCTGGGGCCC GCGGTAGCCTTCGACATGGACTGCCGCAACGCGATGCAGGGGCTCGTCGAGGCGGGTTACTGCCATGCACTTTTAGCGGG GAACGCGCTCGCCACCCACGACCTGGAGGCGGCGCGCTTTCGCACCGGCCTCGGGCAGAACATCTATACCCAGATGGTGA TGCCGATGGGGCATTACAACCACCTGGACATCATCAACGAGGTGCGCCTGCGTGGGGGGATCCCCCAGACCATCGAAGGG CTGGGGCTTTCGGACGGCATCATGTATGCCTGCGCCAAAAAGGGCGTTCCCCTGGTTCTCGCCGGCTCCATCCGTGACGA CGGCCCGCTCCCCGAGGTGATCGCCGACGCCTATCAGGCGCAGGACGCCATGAGAGTGCACGCGCGGCGCGCCACCACGG TGCTGGCCGTTGCCACGCAACTGCACTCCATAGCCTTCGGCAACATGGTTCCCAGCTACAAGGTAATGGAGGACGGAAGG GTGCGGCCGGTCTACTTTTACGTGGTGGACATGACCGAGTTCTGCGTGGACAAACTGGCCAACCGCGGCTCGGCGCAGGC GGTGGGGCTTTTGACCAACGCGCAGGATTTCGTAGTGAACCTCTGGAACCACCTGAAGCAAAAGGGATGA
Upstream 100 bases:
>100_bases TCATCTTGTGCGGGAGGCTTTCCTGTAACAGTTGTAAGCTTTCTCCCTCATGTTAAAGTTTCTCCTGCCGCCCCTTTTGT CATGGGGCTAGGAGGTTTCA
Downstream 100 bases:
>100_bases GCTGAATGGGAAAGGCTGGGGGGAAGATGGAAAACCGTATCAGGATGATAGGCGTGCCGCTGGACCTGGGGCAGGAGCAG CGCGGCGTCGACCTGGGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MAAHSDVIPSYTAPDFRRPKLADAPAARTIPAPGDGVLPQNYHATSNHPEYVHLGGGEWLLAPQSRMDCVIVLKGRVPEV VEPRRVRRGDPVVVGRTENGEEGIYLHIGGFLNLAEPFADKFSFRSRGTRETPFSRSYDELYQVLRHDRDHGYIVWVLGP AVAFDMDCRNAMQGLVEAGYCHALLAGNALATHDLEAARFRTGLGQNIYTQMVMPMGHYNHLDIINEVRLRGGIPQTIEG LGLSDGIMYACAKKGVPLVLAGSIRDDGPLPEVIADAYQAQDAMRVHARRATTVLAVATQLHSIAFGNMVPSYKVMEDGR VRPVYFYVVDMTEFCVDKLANRGSAQAVGLLTNAQDFVVNLWNHLKQKG
Sequences:
>Translated_369_residues MAAHSDVIPSYTAPDFRRPKLADAPAARTIPAPGDGVLPQNYHATSNHPEYVHLGGGEWLLAPQSRMDCVIVLKGRVPEV VEPRRVRRGDPVVVGRTENGEEGIYLHIGGFLNLAEPFADKFSFRSRGTRETPFSRSYDELYQVLRHDRDHGYIVWVLGP AVAFDMDCRNAMQGLVEAGYCHALLAGNALATHDLEAARFRTGLGQNIYTQMVMPMGHYNHLDIINEVRLRGGIPQTIEG LGLSDGIMYACAKKGVPLVLAGSIRDDGPLPEVIADAYQAQDAMRVHARRATTVLAVATQLHSIAFGNMVPSYKVMEDGR VRPVYFYVVDMTEFCVDKLANRGSAQAVGLLTNAQDFVVNLWNHLKQKG >Mature_368_residues AAHSDVIPSYTAPDFRRPKLADAPAARTIPAPGDGVLPQNYHATSNHPEYVHLGGGEWLLAPQSRMDCVIVLKGRVPEVV EPRRVRRGDPVVVGRTENGEEGIYLHIGGFLNLAEPFADKFSFRSRGTRETPFSRSYDELYQVLRHDRDHGYIVWVLGPA VAFDMDCRNAMQGLVEAGYCHALLAGNALATHDLEAARFRTGLGQNIYTQMVMPMGHYNHLDIINEVRLRGGIPQTIEGL GLSDGIMYACAKKGVPLVLAGSIRDDGPLPEVIADAYQAQDAMRVHARRATTVLAVATQLHSIAFGNMVPSYKVMEDGRV RPVYFYVVDMTEFCVDKLANRGSAQAVGLLTNAQDFVVNLWNHLKQKG
Specific function: Unknown
COG id: COG1915
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005239 - InterPro: IPR007545 [H]
Pfam domain/function: PF04455 Saccharop_dh_N [H]
EC number: NA
Molecular weight: Translated: 40647; Mature: 40516
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAHSDVIPSYTAPDFRRPKLADAPAARTIPAPGDGVLPQNYHATSNHPEYVHLGGGEWL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE LAPQSRMDCVIVLKGRVPEVVEPRRVRRGDPVVVGRTENGEEGIYLHIGGFLNLAEPFAD ECCCCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHH KFSFRSRGTRETPFSRSYDELYQVLRHDRDHGYIVWVLGPAVAFDMDCRNAMQGLVEAGY HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEECCCHHHHHHHHHHCCH CHALLAGNALATHDLEAARFRTGLGQNIYTQMVMPMGHYNHLDIINEVRLRGGIPQTIEG HHHHHHCCCHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHC LGLSDGIMYACAKKGVPLVLAGSIRDDGPLPEVIADAYQAQDAMRVHARRATTVLAVATQ CCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHSIAFGNMVPSYKVMEDGRVRPVYFYVVDMTEFCVDKLANRGSAQAVGLLTNAQDFVVN HHHHHHCCCCCCEEECCCCCCCEEEEEEECHHHHHHHHHHCCCCCEEEEEECCHHHHHHH LWNHLKQKG HHHHHHCCC >Mature Secondary Structure AAHSDVIPSYTAPDFRRPKLADAPAARTIPAPGDGVLPQNYHATSNHPEYVHLGGGEWL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE LAPQSRMDCVIVLKGRVPEVVEPRRVRRGDPVVVGRTENGEEGIYLHIGGFLNLAEPFAD ECCCCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHH KFSFRSRGTRETPFSRSYDELYQVLRHDRDHGYIVWVLGPAVAFDMDCRNAMQGLVEAGY HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEECCCHHHHHHHHHHCCH CHALLAGNALATHDLEAARFRTGLGQNIYTQMVMPMGHYNHLDIINEVRLRGGIPQTIEG HHHHHHCCCHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHC LGLSDGIMYACAKKGVPLVLAGSIRDDGPLPEVIADAYQAQDAMRVHARRATTVLAVATQ CCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHSIAFGNMVPSYKVMEDGRVRPVYFYVVDMTEFCVDKLANRGSAQAVGLLTNAQDFVVN HHHHHHCCCCCCEEECCCCCCCEEEEEEECHHHHHHHHHHCCCCCEEEEEECCHHHHHHH LWNHLKQKG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11930014 [H]