| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamJ [C]
Identifier: 197118263
GI number: 197118263
Start: 2175601
End: 2176905
Strand: Direct
Name: bamJ [C]
Synonym: Gbem_1880
Alternate gene names: 197118263
Gene position: 2175601-2176905 (Clockwise)
Preceding gene: 197118262
Following gene: 197118268
Centisome position: 47.14
GC content: 60.46
Gene sequence:
>1305_bases ATGAATCCATTGGCCGCGGAACTTAACGAGTCTCTAGCCCAGCACAGCCCCTATGTCCTGGAGATGCTGTCGGATCTCGG CAAGAATCTCTTCTTCCCCAAAGGTATCCTTACCCAGTCGGCTGAAGCCAAAGAGAAAGCCAACAAATTCAACGCCACCA TCGGCATCGCCACCGAGAACGGCGGCCCGATGTTCCTCTCCTGCATCCAGGACAAGCTCACCGCTTTCGATCCCAAGGAC ATCTACCCGTACGCCCCGCCGGCAGGCAAGCCTGAGCTCCGCTCCCTGTGGCGTGAGAAGATGCTGCGCGAGAACCCGAG CCAGGTAGGCAAGCATTTCAGCAACCCCATCGTCACCAACGCGCTCACCCACGGCCTCTCCATCGTCGCCGACATGTTCG TGGACAAAGGCGACCACCTGATCCTCCCCGACATGCTCTGGGGCAACTACAACCTGACCTTCGGCACCTGCTCCGGCGCC ATCGTCAAGAAGCATCCGACCTTCACCGCTAGCGGCGGCTACGACATCGACGCCTTCAAGGCCGTGCTGCAGAACTCCGC CGAGGAGAAAGGGAAGGTCGTCGTGCTCCTCAACTTCCCGAACAACCCGAGCGGTTATACCCCGACCCAGGCCGAGGGTG ATGCCCTCGTGGCCGCCATCAAGGAAGTCGCCGACGGGGGCTGCAACGTGGTCGCCATCACCGACGACGCCTACTTCGGC CTCTTCTACGAAGACAGCATGAAGGAGTCCTTGTTCGGCAAGCTCGCCAACCTCCATCCGCGCATCCTCGCCGTCAAGCT CGACGGCGCCACAAAGGAGGAGTTCGTCTGGGGCTTCCGCACCGGATTCATCACCTTCGCCGACGGCAACGACTACGAGA ACGCACCGGTCATGAACGCCCTGGAGAAGAAGGCGATGGGCATCATCCGCGCCCGCATCTCCAACTGCCCGCACCCCTCC CAGACCTTCGTCGTCGAGGCGCTGCGCTCCCCGGACTTCCTCAAGCAGAAGGAGGAGAAGTTCCAGATCATGAAGGGTCG CGCGCTGAAGACCAAGGAAGTGCTCAATAGCGGCAAGTACGAGAAGGCGTGGGACTACTATCCGTTCAACTCCGGCTACT TCATGTGCCTGAAGCTGAAGCACGTTGACGCCGAGAAACTCCGCGTGCACCTGTTGGAAAAATACGGCGTCGGCGCCATC TCCACCACCAAGACCGACCTCCGTATCGCCTTCTCCTGCATCGCTGAGAAGGACATCCCCGAGCTCTTCGACATCATCTA CAAGGCGGCGCTCGACCTGGCCTAA
Upstream 100 bases:
>100_bases TTGACAAGAAGACGCTATAGAGATTTAATGGCGTGTCTTTGCCGCACCAGAGAGCGGAACTGCCCCCGGGCACTACCATA TTAAGCTTCAGGAGGAATTA
Downstream 100 bases:
>100_bases AGCCGGTTCGGGTCCCGCAGGCGATTATCCTTAAACGGGAGAAATCGCTATAAACATGAAAGCCCCTGTCGCGTATGCGG CAGGGGCTTTTTTTATGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Aspartate/Aromatic Aminotransferase; Aminotransferase; Aspartate Aminotransferase; Aminotransferase I And II; Aspartate/Tyrosine/Aromatic Aminotransferase; Aminotransferase Class I And Ii
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA
Sequences:
>Translated_434_residues MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA >Mature_434_residues MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA
Specific function: Unknown
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.6.1.- [C]
Molecular weight: Translated: 48005; Mature: 48005
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATEN CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCEEEEEEECC GGPMFLSCIQDKLTAFDPKDIYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTN CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH ALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGAIVKKHPTFTASGGYDIDAFK HHHHHHHHHHHHHHCCCCCEEECCEEECCCEEEEECCCCCEEECCCCEECCCCCCHHHHH AVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG HHHHCCHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNA EEEHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEEEEECEEEEECCCCCCCCHHHHH LEKKAMGIIRARISNCPHPSQTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKY HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCC EKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAISTTKTDLRIAFSCIAEKDIP CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHH ELFDIIYKAALDLA HHHHHHHHHHHCCC >Mature Secondary Structure MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATEN CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCEEEEEEECC GGPMFLSCIQDKLTAFDPKDIYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTN CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH ALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGAIVKKHPTFTASGGYDIDAFK HHHHHHHHHHHHHHCCCCCEEECCEEECCCEEEEECCCCCEEECCCCEECCCCCCHHHHH AVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG HHHHCCHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNA EEEHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEEEEECEEEEECCCCCCCCHHHHH LEKKAMGIIRARISNCPHPSQTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKY HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCC EKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAISTTKTDLRIAFSCIAEKDIP CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHH ELFDIIYKAALDLA HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Pyridoxal Phosphate. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA