Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is bamJ [C]

Identifier: 197118263

GI number: 197118263

Start: 2175601

End: 2176905

Strand: Direct

Name: bamJ [C]

Synonym: Gbem_1880

Alternate gene names: 197118263

Gene position: 2175601-2176905 (Clockwise)

Preceding gene: 197118262

Following gene: 197118268

Centisome position: 47.14

GC content: 60.46

Gene sequence:

>1305_bases
ATGAATCCATTGGCCGCGGAACTTAACGAGTCTCTAGCCCAGCACAGCCCCTATGTCCTGGAGATGCTGTCGGATCTCGG
CAAGAATCTCTTCTTCCCCAAAGGTATCCTTACCCAGTCGGCTGAAGCCAAAGAGAAAGCCAACAAATTCAACGCCACCA
TCGGCATCGCCACCGAGAACGGCGGCCCGATGTTCCTCTCCTGCATCCAGGACAAGCTCACCGCTTTCGATCCCAAGGAC
ATCTACCCGTACGCCCCGCCGGCAGGCAAGCCTGAGCTCCGCTCCCTGTGGCGTGAGAAGATGCTGCGCGAGAACCCGAG
CCAGGTAGGCAAGCATTTCAGCAACCCCATCGTCACCAACGCGCTCACCCACGGCCTCTCCATCGTCGCCGACATGTTCG
TGGACAAAGGCGACCACCTGATCCTCCCCGACATGCTCTGGGGCAACTACAACCTGACCTTCGGCACCTGCTCCGGCGCC
ATCGTCAAGAAGCATCCGACCTTCACCGCTAGCGGCGGCTACGACATCGACGCCTTCAAGGCCGTGCTGCAGAACTCCGC
CGAGGAGAAAGGGAAGGTCGTCGTGCTCCTCAACTTCCCGAACAACCCGAGCGGTTATACCCCGACCCAGGCCGAGGGTG
ATGCCCTCGTGGCCGCCATCAAGGAAGTCGCCGACGGGGGCTGCAACGTGGTCGCCATCACCGACGACGCCTACTTCGGC
CTCTTCTACGAAGACAGCATGAAGGAGTCCTTGTTCGGCAAGCTCGCCAACCTCCATCCGCGCATCCTCGCCGTCAAGCT
CGACGGCGCCACAAAGGAGGAGTTCGTCTGGGGCTTCCGCACCGGATTCATCACCTTCGCCGACGGCAACGACTACGAGA
ACGCACCGGTCATGAACGCCCTGGAGAAGAAGGCGATGGGCATCATCCGCGCCCGCATCTCCAACTGCCCGCACCCCTCC
CAGACCTTCGTCGTCGAGGCGCTGCGCTCCCCGGACTTCCTCAAGCAGAAGGAGGAGAAGTTCCAGATCATGAAGGGTCG
CGCGCTGAAGACCAAGGAAGTGCTCAATAGCGGCAAGTACGAGAAGGCGTGGGACTACTATCCGTTCAACTCCGGCTACT
TCATGTGCCTGAAGCTGAAGCACGTTGACGCCGAGAAACTCCGCGTGCACCTGTTGGAAAAATACGGCGTCGGCGCCATC
TCCACCACCAAGACCGACCTCCGTATCGCCTTCTCCTGCATCGCTGAGAAGGACATCCCCGAGCTCTTCGACATCATCTA
CAAGGCGGCGCTCGACCTGGCCTAA

Upstream 100 bases:

>100_bases
TTGACAAGAAGACGCTATAGAGATTTAATGGCGTGTCTTTGCCGCACCAGAGAGCGGAACTGCCCCCGGGCACTACCATA
TTAAGCTTCAGGAGGAATTA

Downstream 100 bases:

>100_bases
AGCCGGTTCGGGTCCCGCAGGCGATTATCCTTAAACGGGAGAAATCGCTATAAACATGAAAGCCCCTGTCGCGTATGCGG
CAGGGGCTTTTTTTATGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Aspartate/Aromatic Aminotransferase; Aminotransferase; Aspartate Aminotransferase; Aminotransferase I And II; Aspartate/Tyrosine/Aromatic Aminotransferase; Aminotransferase Class I And Ii

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD
IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA
IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG
LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS
QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI
STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA

Sequences:

>Translated_434_residues
MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD
IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA
IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG
LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS
QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI
STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA
>Mature_434_residues
MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATENGGPMFLSCIQDKLTAFDPKD
IYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTNALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGA
IVKKHPTFTASGGYDIDAFKAVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG
LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNALEKKAMGIIRARISNCPHPS
QTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKYEKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAI
STTKTDLRIAFSCIAEKDIPELFDIIYKAALDLA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.6.1.- [C]

Molecular weight: Translated: 48005; Mature: 48005

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATEN
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCEEEEEEECC
GGPMFLSCIQDKLTAFDPKDIYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
ALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGAIVKKHPTFTASGGYDIDAFK
HHHHHHHHHHHHHHCCCCCEEECCEEECCCEEEEECCCCCEEECCCCEECCCCCCHHHHH
AVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG
HHHHCCHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE
LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNA
EEEHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEEEEECEEEEECCCCCCCCHHHHH
LEKKAMGIIRARISNCPHPSQTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCC
EKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAISTTKTDLRIAFSCIAEKDIP
CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHH
ELFDIIYKAALDLA
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNPLAAELNESLAQHSPYVLEMLSDLGKNLFFPKGILTQSAEAKEKANKFNATIGIATEN
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCEEEEEEECC
GGPMFLSCIQDKLTAFDPKDIYPYAPPAGKPELRSLWREKMLRENPSQVGKHFSNPIVTN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
ALTHGLSIVADMFVDKGDHLILPDMLWGNYNLTFGTCSGAIVKKHPTFTASGGYDIDAFK
HHHHHHHHHHHHHHCCCCCEEECCEEECCCEEEEECCCCCEEECCCCEECCCCCCHHHHH
AVLQNSAEEKGKVVVLLNFPNNPSGYTPTQAEGDALVAAIKEVADGGCNVVAITDDAYFG
HHHHCCHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEE
LFYEDSMKESLFGKLANLHPRILAVKLDGATKEEFVWGFRTGFITFADGNDYENAPVMNA
EEEHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEEEEECEEEEECCCCCCCCHHHHH
LEKKAMGIIRARISNCPHPSQTFVVEALRSPDFLKQKEEKFQIMKGRALKTKEVLNSGKY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCC
EKAWDYYPFNSGYFMCLKLKHVDAEKLRVHLLEKYGVGAISTTKTDLRIAFSCIAEKDIP
CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHH
ELFDIIYKAALDLA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA