Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is apgM [H]

Identifier: 197118262

GI number: 197118262

Start: 2174182

End: 2175381

Strand: Direct

Name: apgM [H]

Synonym: Gbem_1879

Alternate gene names: 197118262

Gene position: 2174182-2175381 (Clockwise)

Preceding gene: 197118261

Following gene: 197118263

Centisome position: 47.11

GC content: 64.83

Gene sequence:

>1200_bases
ATGAAGTACGTAGTTCTTCTGGGCGACGGGATGTCGGACCAGGCTGTCGCCGCTCTCGACGGCAAGACGCCGCTGCAGGC
GGCCAAGACCCCCAACATGGACTTCATGGCCAGACGCGGGAAGCTGGGGCTCGCCCACACGGTTCCCGAGGGGTACCCCC
CCGGAAGCGACGTCGCCAACCTCTCCATGTTCGGCTACGACCCGGTTCAGTGCTACACCGGCCGTTCGCCGCTGGAAGCC
GCCAGCATGGGAGTCGAGCTCGGCCCCGACGACGTCGCCTTCCGCGTCAACCTGGTGCACCTGGAAGCACGCGGCGGCAA
GCTCATCATGGAAGACTACTCAGCCGGCCACATCACCACCGAAGACGGCCGCGAGCTGATCGAGGAGCTGCAGCGCCAGC
TGGGGGACGAGGAATTCTCCTTCCACCCCGGGGTCAGCTACCGGCACCTGATGGTCTGGCACAACGGCAAGAGCCAGATC
AAGGCGACCCCGCCGCACGACATCACCGGTCAGGACATCATCTCCCACATGCCGTCCGGGGAGGGGAGCGACCGCCTCAT
CTACATCATGAACTCCGCGCAGATGATCTTTCACAACCACCCTCAGATGAAGCGGCGCTCCGCCAAGGGCGAGATCGCAG
CCAACTCGATCTGGCTCTGGGGGCAGGGGAAGGCGCCGGCGATGGAGGAGTTCGGTCCCAAGTTCGGCCTCACCGGCGCC
GTCATCTCCGCCGTCGACCTGATCAAGGGGATCGGCGTCTACGCCGGGCTCGACATCATCAACGTCCCCGGGGCCACCGG
CTACCTCGATACCAACTTCGACGGCAAGGCCCAGGCCGCCATAGAGGCGCTCAAAGAGCGCGACTTCGTCTTCGTGCACG
TGGAGGCACCCGACGAGGCCTCCCACTCGGGGAAGCTGGCCGACAAGATCAAGGCCATCGAACTCTTCGACGAGAAGGTG
GTCGGCCCCGTGCTGGAAGGGGTGAAAAAGTACGGCGAGTACCGCATCCTCTGTGCGCCGGACCACCCTACGCCGATCGC
GCTCATGACCCATACCTCCGACCCGGTCCCCTTCGTCATCTATGCCGGCGAAAAGGACGAGAAGCCGGAAGTGGCAGGGT
ACGACGAATCCTCCGCCGCCGCCACCAAGCTCAAGGTCGACCCCGGCTACAAGCTGATGGAACTCCTCCTGGGGCGCTAA

Upstream 100 bases:

>100_bases
ATGAGGTCCATGGGGTCCATAGAGTCCATTGGGTCCACAAAAGGGTAGGGTAAGACCAAAAGCAAACCACCAAACCAAAG
CAGCAAAAAGGAAAGCCAAT

Downstream 100 bases:

>100_bases
TCCCCGCCTTGCATCGCTTCCTTCAGGGCGCTCCCCCTCCATCCGGAGAGGGGAGCGCCTAAAGTCGTACCTGTATACCA
CAAATATTAGTCGTACCCCT

Product: cofactor-independent phosphoglycerate mutase

Products: NA

Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; aPGAM [H]

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MKYVVLLGDGMSDQAVAALDGKTPLQAAKTPNMDFMARRGKLGLAHTVPEGYPPGSDVANLSMFGYDPVQCYTGRSPLEA
ASMGVELGPDDVAFRVNLVHLEARGGKLIMEDYSAGHITTEDGRELIEELQRQLGDEEFSFHPGVSYRHLMVWHNGKSQI
KATPPHDITGQDIISHMPSGEGSDRLIYIMNSAQMIFHNHPQMKRRSAKGEIAANSIWLWGQGKAPAMEEFGPKFGLTGA
VISAVDLIKGIGVYAGLDIINVPGATGYLDTNFDGKAQAAIEALKERDFVFVHVEAPDEASHSGKLADKIKAIELFDEKV
VGPVLEGVKKYGEYRILCAPDHPTPIALMTHTSDPVPFVIYAGEKDEKPEVAGYDESSAAATKLKVDPGYKLMELLLGR

Sequences:

>Translated_399_residues
MKYVVLLGDGMSDQAVAALDGKTPLQAAKTPNMDFMARRGKLGLAHTVPEGYPPGSDVANLSMFGYDPVQCYTGRSPLEA
ASMGVELGPDDVAFRVNLVHLEARGGKLIMEDYSAGHITTEDGRELIEELQRQLGDEEFSFHPGVSYRHLMVWHNGKSQI
KATPPHDITGQDIISHMPSGEGSDRLIYIMNSAQMIFHNHPQMKRRSAKGEIAANSIWLWGQGKAPAMEEFGPKFGLTGA
VISAVDLIKGIGVYAGLDIINVPGATGYLDTNFDGKAQAAIEALKERDFVFVHVEAPDEASHSGKLADKIKAIELFDEKV
VGPVLEGVKKYGEYRILCAPDHPTPIALMTHTSDPVPFVIYAGEKDEKPEVAGYDESSAAATKLKVDPGYKLMELLLGR
>Mature_399_residues
MKYVVLLGDGMSDQAVAALDGKTPLQAAKTPNMDFMARRGKLGLAHTVPEGYPPGSDVANLSMFGYDPVQCYTGRSPLEA
ASMGVELGPDDVAFRVNLVHLEARGGKLIMEDYSAGHITTEDGRELIEELQRQLGDEEFSFHPGVSYRHLMVWHNGKSQI
KATPPHDITGQDIISHMPSGEGSDRLIYIMNSAQMIFHNHPQMKRRSAKGEIAANSIWLWGQGKAPAMEEFGPKFGLTGA
VISAVDLIKGIGVYAGLDIINVPGATGYLDTNFDGKAQAAIEALKERDFVFVHVEAPDEASHSGKLADKIKAIELFDEKV
VGPVLEGVKKYGEYRILCAPDHPTPIALMTHTSDPVPFVIYAGEKDEKPEVAGYDESSAAATKLKVDPGYKLMELLLGR

Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]

COG id: COG3635

COG function: function code G; Predicted phosphoglycerate mutase, AP superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR004456
- InterPro:   IPR013371
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme; PF10143 PhosphMutase [H]

EC number: =5.4.2.1 [H]

Molecular weight: Translated: 43317; Mature: 43317

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVVLLGDGMSDQAVAALDGKTPLQAAKTPNMDFMARRGKLGLAHTVPEGYPPGSDVAN
CEEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCE
LSMFGYDPVQCYTGRSPLEAASMGVELGPDDVAFRVNLVHLEARGGKLIMEDYSAGHITT
EEEECCCCEEEECCCCCHHHHHCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCEEC
EDGRELIEELQRQLGDEEFSFHPGVSYRHLMVWHNGKSQIKATPPHDITGQDIISHMPSG
HHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHHHHHCCCC
EGSDRLIYIMNSAQMIFHNHPQMKRRSAKGEIAANSIWLWGQGKAPAMEEFGPKFGLTGA
CCCCEEEEEECCCEEEEECCCHHHHHCCCCCEEECEEEEEECCCCCCHHHCCCCCCCHHH
VISAVDLIKGIGVYAGLDIINVPGATGYLDTNFDGKAQAAIEALKERDFVFVHVEAPDEA
HHHHHHHHHHCHHHCCCEEEECCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC
SHSGKLADKIKAIELFDEKVVGPVLEGVKKYGEYRILCAPDHPTPIALMTHTSDPVPFVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCEEE
YAGEKDEKPEVAGYDESSAAATKLKVDPGYKLMELLLGR
ECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MKYVVLLGDGMSDQAVAALDGKTPLQAAKTPNMDFMARRGKLGLAHTVPEGYPPGSDVAN
CEEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCE
LSMFGYDPVQCYTGRSPLEAASMGVELGPDDVAFRVNLVHLEARGGKLIMEDYSAGHITT
EEEECCCCEEEECCCCCHHHHHCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCEEC
EDGRELIEELQRQLGDEEFSFHPGVSYRHLMVWHNGKSQIKATPPHDITGQDIISHMPSG
HHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHHHHHCCCC
EGSDRLIYIMNSAQMIFHNHPQMKRRSAKGEIAANSIWLWGQGKAPAMEEFGPKFGLTGA
CCCCEEEEEECCCEEEEECCCHHHHHCCCCCEEECEEEEEECCCCCCHHHCCCCCCCHHH
VISAVDLIKGIGVYAGLDIINVPGATGYLDTNFDGKAQAAIEALKERDFVFVHVEAPDEA
HHHHHHHHHHCHHHCCCEEEECCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC
SHSGKLADKIKAIELFDEKVVGPVLEGVKKYGEYRILCAPDHPTPIALMTHTSDPVPFVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCEEE
YAGEKDEKPEVAGYDESSAAATKLKVDPGYKLMELLLGR
ECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA