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The map label for this gene is cydA-1 [H]

Identifier: 197117657

GI number: 197117657

Start: 1465356

End: 1466699

Strand: Direct

Name: cydA-1 [H]

Synonym: Gbem_1269

Alternate gene names: 197117657

Gene position: 1465356-1466699 (Clockwise)

Preceding gene: 197117656

Following gene: 197117658

Centisome position: 31.75

GC content: 61.09

Gene sequence:

>1344_bases
ATGGATGTATTGACCTTGAGCAGGCTGCAGTTTGCCGTCACCAGCATGTTCCACTTCATTTTTGTCCCGTTGACCCTGGG
GCTGTCGGTCCTCGTCGCCGCCATGGAAACCCGCTACGTGGTCACCGGCAACGAGATGTACAAGAGGATGACGAAGTTCT
GGGGGAAGCTCTTCCTGATCAACTTCGCGCTGGGGGTGGTGACCGGCATCACCCTGGAGTTCCAGTTCGGCATGAACTGG
GCCGAGTACTCCCGCTACGTGGGGGACATCTTCGGCGCCCCGCTCGCCATCGAGGCGACGGTCGCCTTCTTTCTGGAGTC
CGTGTTCATAGGCGTCTGGGCCTTCGGCTGGAACAAAGTGGGAAAGAAGATGCATGCGGCTTCGATCTGGATCGTCGCGC
TGGCGACCAACCTCTCGGGGCTTTGGATCCTGCTCGCCAACGGCTGGATGCAGCACCCGGTGGGGTACGTCCTTAGAAAC
GGCCGCGCCGAGATGGTCGACTTCATGGCGCTCATCACCAACCCCTTCGGCCTTTTGAAATTCGGGCACCAGATCGTTTC
CGGCTACACGGTGGGCGCCTTCTTCGTGATGGGGGTGTCGGCCTGGCACCTGCTCAGGGGGCGCAACCGCGATTTCTTCA
AGGCATCTTTCGGCATGGCTGCCGTCTTCGCCCTTGCCTCCACGCTGATGGTAGCCGTCATCGGGGATTTCCACGCGGTC
GACGTCGCCAAGACCCAGCCCGCCAAGTTCGCGGCCATGGAGTCCATCTGGGACAGCTGCCGCAACGCCCCCATGCACCT
GATCGCGTTTCCCGACGAGAAGAACCAGTGCAACCTCGTCTCCGCCTTCCCGGTTCCGGGTATGCTGAGCCTTCTGGCCT
ATCATGACCTGAACGCCGAGGTGCGGGGGTTGAATTCCTTCCCGAAGGCGGACCGCCCGCCGGTGCTCCCGGTCTTTCTG
AGCTTCCGCGCCATGGTGGGGCTTGGGACGCTCTTCATCGTCCTCGCCGCCGTCTCCATCTTTTTCCACCGCAAGAACCT
TTTGGAGAAATACCCCTGGTTCCTGCGCGCGATGGTCCTCTGCATCCCGCTCCCTTACATCGCCAACCAACTGGGGTGGG
TGGTGTCCGAGGTGGGGAGGCAGCCCTGGATCGTCTATGGTCTCATGAGGACCTCGGACGCGGTGTCGAAGAGCATCGAC
CTGTCTCAGGTGATCGGTTCGCTGCTCGGCTTCACGCTCCTTTACGGGCTTTTAGGCTTTGTCGATATCTACCTTCTGGC
GAAGTTCGCCCGCAAGGGGCCGGAAGAAACGACCATTGGCGCCACCGGCGCATTCGGAAAATAG

Upstream 100 bases:

>100_bases
TGTTTATCCCGTATACACTATTGGCTTGAACCGGTTTTAATGATAGAAGTACGGGCCCCCGGCCCCAAAACGTGCATTTA
ATATTCAAAGGAGCGCACAG

Downstream 100 bases:

>100_bases
GGGGAGCAAATGGATCTGCATATCGTTTGGTTTGTGCTTTGGGGTGTTCTGTGGGGGGGCTATTTCATGCTGGACGGTTT
CGTGCTGGGAGGCGGCATGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDVLTLSRLQFAVTSMFHFIFVPLTLGLSVLVAAMETRYVVTGNEMYKRMTKFWGKLFLINFALGVVTGITLEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWAFGWNKVGKKMHAASIWIVALATNLSGLWILLANGWMQHPVGYVLRN
GRAEMVDFMALITNPFGLLKFGHQIVSGYTVGAFFVMGVSAWHLLRGRNRDFFKASFGMAAVFALASTLMVAVIGDFHAV
DVAKTQPAKFAAMESIWDSCRNAPMHLIAFPDEKNQCNLVSAFPVPGMLSLLAYHDLNAEVRGLNSFPKADRPPVLPVFL
SFRAMVGLGTLFIVLAAVSIFFHRKNLLEKYPWFLRAMVLCIPLPYIANQLGWVVSEVGRQPWIVYGLMRTSDAVSKSID
LSQVIGSLLGFTLLYGLLGFVDIYLLAKFARKGPEETTIGATGAFGK

Sequences:

>Translated_447_residues
MDVLTLSRLQFAVTSMFHFIFVPLTLGLSVLVAAMETRYVVTGNEMYKRMTKFWGKLFLINFALGVVTGITLEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWAFGWNKVGKKMHAASIWIVALATNLSGLWILLANGWMQHPVGYVLRN
GRAEMVDFMALITNPFGLLKFGHQIVSGYTVGAFFVMGVSAWHLLRGRNRDFFKASFGMAAVFALASTLMVAVIGDFHAV
DVAKTQPAKFAAMESIWDSCRNAPMHLIAFPDEKNQCNLVSAFPVPGMLSLLAYHDLNAEVRGLNSFPKADRPPVLPVFL
SFRAMVGLGTLFIVLAAVSIFFHRKNLLEKYPWFLRAMVLCIPLPYIANQLGWVVSEVGRQPWIVYGLMRTSDAVSKSID
LSQVIGSLLGFTLLYGLLGFVDIYLLAKFARKGPEETTIGATGAFGK
>Mature_447_residues
MDVLTLSRLQFAVTSMFHFIFVPLTLGLSVLVAAMETRYVVTGNEMYKRMTKFWGKLFLINFALGVVTGITLEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWAFGWNKVGKKMHAASIWIVALATNLSGLWILLANGWMQHPVGYVLRN
GRAEMVDFMALITNPFGLLKFGHQIVSGYTVGAFFVMGVSAWHLLRGRNRDFFKASFGMAAVFALASTLMVAVIGDFHAV
DVAKTQPAKFAAMESIWDSCRNAPMHLIAFPDEKNQCNLVSAFPVPGMLSLLAYHDLNAEVRGLNSFPKADRPPVLPVFL
SFRAMVGLGTLFIVLAAVSIFFHRKNLLEKYPWFLRAMVLCIPLPYIANQLGWVVSEVGRQPWIVYGLMRTSDAVSKSID
LSQVIGSLLGFTLLYGLLGFVDIYLLAKFARKGPEETTIGATGAFGK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=508, Percent_Identity=41.5354330708661, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1787212, Length=502, Percent_Identity=40.0398406374502, Blast_Score=355, Evalue=2e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49515; Mature: 49515

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLTLSRLQFAVTSMFHFIFVPLTLGLSVLVAAMETRYVVTGNEMYKRMTKFWGKLFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHH
NFALGVVTGITLEFQFGMNWAEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWAFGWNKV
HHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GKKMHAASIWIVALATNLSGLWILLANGWMQHPVGYVLRNGRAEMVDFMALITNPFGLLK
HHHHHHHHHEEHHHHCCCCCEEEEEECCHHHCCHHHHHHCCHHHHHHHHHHHHCCHHHHH
FGHQIVSGYTVGAFFVMGVSAWHLLRGRNRDFFKASFGMAAVFALASTLMVAVIGDFHAV
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHE
DVAKTQPAKFAAMESIWDSCRNAPMHLIAFPDEKNQCNLVSAFPVPGMLSLLAYHDLNAE
ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCCH
VRGLNSFPKADRPPVLPVFLSFRAMVGLGTLFIVLAAVSIFFHRKNLLEKYPWFLRAMVL
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
CIPLPYIANQLGWVVSEVGRQPWIVYGLMRTSDAVSKSIDLSQVIGSLLGFTLLYGLLGF
HHCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VDIYLLAKFARKGPEETTIGATGAFGK
HHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVLTLSRLQFAVTSMFHFIFVPLTLGLSVLVAAMETRYVVTGNEMYKRMTKFWGKLFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHH
NFALGVVTGITLEFQFGMNWAEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWAFGWNKV
HHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GKKMHAASIWIVALATNLSGLWILLANGWMQHPVGYVLRNGRAEMVDFMALITNPFGLLK
HHHHHHHHHEEHHHHCCCCCEEEEEECCHHHCCHHHHHHCCHHHHHHHHHHHHCCHHHHH
FGHQIVSGYTVGAFFVMGVSAWHLLRGRNRDFFKASFGMAAVFALASTLMVAVIGDFHAV
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHE
DVAKTQPAKFAAMESIWDSCRNAPMHLIAFPDEKNQCNLVSAFPVPGMLSLLAYHDLNAE
ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCCH
VRGLNSFPKADRPPVLPVFLSFRAMVGLGTLFIVLAAVSIFFHRKNLLEKYPWFLRAMVL
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
CIPLPYIANQLGWVVSEVGRQPWIVYGLMRTSDAVSKSIDLSQVIGSLLGFTLLYGLLGF
HHCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VDIYLLAKFARKGPEETTIGATGAFGK
HHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]