Click here to switch to the map view.

The map label for this gene is cydB-1 [H]

Identifier: 197117658

GI number: 197117658

Start: 1466709

End: 1467737

Strand: Direct

Name: cydB-1 [H]

Synonym: Gbem_1270

Alternate gene names: 197117658

Gene position: 1466709-1467737 (Clockwise)

Preceding gene: 197117657

Following gene: 197117659

Centisome position: 31.78

GC content: 61.61

Gene sequence:

>1029_bases
ATGGATCTGCATATCGTTTGGTTTGTGCTTTGGGGTGTTCTGTGGGGGGGCTATTTCATGCTGGACGGTTTCGTGCTGGG
AGGCGGCATGCTGCACCGCGTGCTGGGCAGAGACGATACCGACCGGCGCGTCCTCATCAACAGCTACGGCCCCGTATGGG
ACGGTAACGAGGTCTGGCTGGTGACCGCCGGGGGCGCCACCTTTGCCGCCTTCCCGACCACCTATGCGCTTATGTTCAGC
TACCTGTACACCCCGTTATTGCTGCTTCTTTTCGCGCTCATCGTGCGCGGGGTCTCCTTCGAGTTCCGCGGCAAGGAAGA
CGGCGCGCTCTGGAAGGGGTGCTGGGACTGGGCCATCGTGATCTCAAGCTTTATCCCGGCGCTTTTGTTCGGGGTGGCCT
TCGGCAACATCTTCGCCGGTCTCCCCATGGACGAGGCGGGCTACCACGGCTCTCTCATCTACTTGTTGAACCCATACGGC
GTGGTGAGCGGTCTTCTCTTCGTACTGCTCTTTCTGGAGCACGGCGCGCTCTACGCGGCCCTGAAGAGCACCGGTGCCCT
GAGCCGTCGCGCCGAAGAGACGGCGAAGGCAACCTGGATTCCGCTGCTGGTGGTGGCCGTTGGCTTTTTGGGCTACAGCT
ATTTCGCAACGAGGCTTTACGACAACTACCTCGCCGCCCCCGTCTTCGCCGTGGTGCCGCTCCTGGCCGTGGCAGCGCTC
TTAGCCGTGCGCCTGTTCCTTGCCAAGGGGAAAACCCTGGCGGCTTTCACGGCATCCTGCGCCACCATCCTAGGCGTGGT
TTTCACCGGCGTCATCGGGCTCTTTCCGAACCTGATACCCTCGAACCTCGACGCGCTGTACAGCCTCACCATATACAACA
GCTCCTCCTCCGATTACACGCTGCGCATCATGACCTTCGTCGCCTTCATCTTCGTGCCGATCGTGATCGCCTACAAGATC
TGGGTATACCGGCTCTTCCGGGGTCGGGTCAGCGCCGAGACCCTGGCCGGGGATCACGAGGCCTACTAG

Upstream 100 bases:

>100_bases
AGGCTTTGTCGATATCTACCTTCTGGCGAAGTTCGCCCGCAAGGGGCCGGAAGAAACGACCATTGGCGCCACCGGCGCAT
TCGGAAAATAGGGGGAGCAA

Downstream 100 bases:

>100_bases
TTTTTAAAAGCGCCAGCCGCGCCTCCGGCTCTGTCCGGGGGCGCGGCGGAGCCTTTCGCGCCTTCTAGTTGCGGGAGCTC
TCCCCCCTTTGCGGCAGGTT

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDLHIVWFVLWGVLWGGYFMLDGFVLGGGMLHRVLGRDDTDRRVLINSYGPVWDGNEVWLVTAGGATFAAFPTTYALMFS
YLYTPLLLLLFALIVRGVSFEFRGKEDGALWKGCWDWAIVISSFIPALLFGVAFGNIFAGLPMDEAGYHGSLIYLLNPYG
VVSGLLFVLLFLEHGALYAALKSTGALSRRAEETAKATWIPLLVVAVGFLGYSYFATRLYDNYLAAPVFAVVPLLAVAAL
LAVRLFLAKGKTLAAFTASCATILGVVFTGVIGLFPNLIPSNLDALYSLTIYNSSSSDYTLRIMTFVAFIFVPIVIAYKI
WVYRLFRGRVSAETLAGDHEAY

Sequences:

>Translated_342_residues
MDLHIVWFVLWGVLWGGYFMLDGFVLGGGMLHRVLGRDDTDRRVLINSYGPVWDGNEVWLVTAGGATFAAFPTTYALMFS
YLYTPLLLLLFALIVRGVSFEFRGKEDGALWKGCWDWAIVISSFIPALLFGVAFGNIFAGLPMDEAGYHGSLIYLLNPYG
VVSGLLFVLLFLEHGALYAALKSTGALSRRAEETAKATWIPLLVVAVGFLGYSYFATRLYDNYLAAPVFAVVPLLAVAAL
LAVRLFLAKGKTLAAFTASCATILGVVFTGVIGLFPNLIPSNLDALYSLTIYNSSSSDYTLRIMTFVAFIFVPIVIAYKI
WVYRLFRGRVSAETLAGDHEAY
>Mature_342_residues
MDLHIVWFVLWGVLWGGYFMLDGFVLGGGMLHRVLGRDDTDRRVLINSYGPVWDGNEVWLVTAGGATFAAFPTTYALMFS
YLYTPLLLLLFALIVRGVSFEFRGKEDGALWKGCWDWAIVISSFIPALLFGVAFGNIFAGLPMDEAGYHGSLIYLLNPYG
VVSGLLFVLLFLEHGALYAALKSTGALSRRAEETAKATWIPLLVVAVGFLGYSYFATRLYDNYLAAPVFAVVPLLAVAAL
LAVRLFLAKGKTLAAFTASCATILGVVFTGVIGLFPNLIPSNLDALYSLTIYNSSSSDYTLRIMTFVAFIFVPIVIAYKI
WVYRLFRGRVSAETLAGDHEAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=375, Percent_Identity=37.6, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI1787213, Length=372, Percent_Identity=34.1397849462366, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37555; Mature: 37555

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLHIVWFVLWGVLWGGYFMLDGFVLGGGMLHRVLGRDDTDRRVLINSYGPVWDGNEVWL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEE
VTAGGATFAAFPTTYALMFSYLYTPLLLLLFALIVRGVSFEFRGKEDGALWKGCWDWAIV
EEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
ISSFIPALLFGVAFGNIFAGLPMDEAGYHGSLIYLLNPYGVVSGLLFVLLFLEHGALYAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHH
LKSTGALSRRAEETAKATWIPLLVVAVGFLGYSYFATRLYDNYLAAPVFAVVPLLAVAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVRLFLAKGKTLAAFTASCATILGVVFTGVIGLFPNLIPSNLDALYSLTIYNSSSSDYT
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCHH
LRIMTFVAFIFVPIVIAYKIWVYRLFRGRVSAETLAGDHEAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure
MDLHIVWFVLWGVLWGGYFMLDGFVLGGGMLHRVLGRDDTDRRVLINSYGPVWDGNEVWL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEE
VTAGGATFAAFPTTYALMFSYLYTPLLLLLFALIVRGVSFEFRGKEDGALWKGCWDWAIV
EEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
ISSFIPALLFGVAFGNIFAGLPMDEAGYHGSLIYLLNPYGVVSGLLFVLLFLEHGALYAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHH
LKSTGALSRRAEETAKATWIPLLVVAVGFLGYSYFATRLYDNYLAAPVFAVVPLLAVAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVRLFLAKGKTLAAFTASCATILGVVFTGVIGLFPNLIPSNLDALYSLTIYNSSSSDYT
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCHH
LRIMTFVAFIFVPIVIAYKIWVYRLFRGRVSAETLAGDHEAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]