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The map label for this gene is xseB

Identifier: 197117644

GI number: 197117644

Start: 1453142

End: 1453369

Strand: Direct

Name: xseB

Synonym: Gbem_1256

Alternate gene names: 197117644

Gene position: 1453142-1453369 (Clockwise)

Preceding gene: 197117643

Following gene: 197117645

Centisome position: 31.49

GC content: 58.77

Gene sequence:

>228_bases
ATGGCAGTGGAGAAGTTCGAGACCGCGCTGAAAAAGCTAGAGGACGTGGTGAAGAAGCTTGAAGGTGGCGAGCTCTCCCT
GGAGGAGTCCCTGAAGGCGTTCGAGGAGGGGGTGAAGTTTTCCGCCTTCTGCAGCAAAAAGCTGAACGAGGCCGAGCGGC
GGGTGGAGACCCTCGTCAAGCAGCGCGACGGCAGCTTCGTCACCAAGCCATTCGAGGAAGAGGAATAG

Upstream 100 bases:

>100_bases
CCCACGATCAGTATAATAGGCGATCTCTTTTTAATAATTCCCGGCGCCTGCGGCGTTAATCTTCGCTAAAGGCACGGCTA
GAGGGACGAGAGGGTTATTC

Downstream 100 bases:

>100_bases
AGAGCCGCGGGACGCGGCCAACGTAACTTATCGAAAAGTGAGACATGATATGGATCTGAAGCAATATTTGAAGCAGAAGT
GTGAGTTGGTCGACCAGGCG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MAVEKFETALKKLEDVVKKLEGGELSLEESLKAFEEGVKFSAFCSKKLNEAERRVETLVKQRDGSFVTKPFEEEE

Sequences:

>Translated_75_residues
MAVEKFETALKKLEDVVKKLEGGELSLEESLKAFEEGVKFSAFCSKKLNEAERRVETLVKQRDGSFVTKPFEEEE
>Mature_74_residues
AVEKFETALKKLEDVVKKLEGGELSLEESLKAFEEGVKFSAFCSKKLNEAERRVETLVKQRDGSFVTKPFEEEE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_GEOBB (B5EI11)

Other databases:

- EMBL:   CP001124
- RefSeq:   YP_002138071.1
- ProteinModelPortal:   B5EI11
- SMR:   B5EI11
- GeneID:   6781240
- GenomeReviews:   CP001124_GR
- KEGG:   gbm:Gbem_1256
- HOGENOM:   HBG728416
- OMA:   CSKKLNE
- ProtClustDB:   PRK14066
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8571; Mature: 8440

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEKFETALKKLEDVVKKLEGGELSLEESLKAFEEGVKFSAFCSKKLNEAERRVETLVK
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRDGSFVTKPFEEEE
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVEKFETALKKLEDVVKKLEGGELSLEESLKAFEEGVKFSAFCSKKLNEAERRVETLVK
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRDGSFVTKPFEEEE
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA