Click here to switch to the map view.

The map label for this gene is yfiA [H]

Identifier: 197117262

GI number: 197117262

Start: 1025869

End: 1026417

Strand: Direct

Name: yfiA [H]

Synonym: Gbem_0870

Alternate gene names: 197117262

Gene position: 1025869-1026417 (Clockwise)

Preceding gene: 197117261

Following gene: 197117263

Centisome position: 22.23

GC content: 57.19

Gene sequence:

>549_bases
ATGCAAACAACCGTGACGTTCAGACACATGGAGCCGAGCGACGCTCTCAAGAGCTACGCAGAAGAGAAACTGGAGCGGGT
TAAGAAATATATAGACGAGCCGATCGTCGTCCAGGTATTTTTGACCGTTGAGAAGATCCGTCACATGGCCGAGGTAACCA
TCACCGCCAAGGGGATCACCATCAAGGCCGCAGAAGAAACCAACGACATGTACGCCTCCATCGACGCAGTTTCGGACAAG
ATCGAGCGCCAGCTGCGCCGCTTCAAGGAGCGCATCAAGGCCCACAAGCCCGCCCCCGACGCCCGCGAGCGCCAGGTGCA
AAAGAGCATCGTCGAGGCCCAGAGCATCGAAGAAGGGGCACAGGCCCCGGTCATCATCAAGACCAAGAGCTTCTCCATGA
AGCCCATGTCCGTCGAGGAAGCCGTGATGCAGATGGAACTTTTGCACAAGGACTTCCTGGTCTACACCGAGTCCTCCACC
GAGAAGATCAACGTCGTGTACCGCAGGAAAGACGGCAACTACGGCCTGATCTCCCCGGAGATCGCCTGA

Upstream 100 bases:

>100_bases
TCGGCTCGTCTTCGGAGCGCAAGAAGCATTTCTAAACGCGGGCGCCGCCGTCGGCCGGCGCGTGAGCCGCGTGTATTGAC
AATAAAGGGAGGTACTTATT

Downstream 100 bases:

>100_bases
TCGCCGGCACGCCGGCAGCCATGCTGAAAAAGGGAGCTTTTAGCTCCCGGTAAAGGATAGGGAGGCGCCCCCCGTGGCGC
CTCCCATCATCTACGGCCCC

Product: ribosomal subunit interface-associated sigma-54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGITIKAAEETNDMYASIDAVSDK
IERQLRRFKERIKAHKPAPDARERQVQKSIVEAQSIEEGAQAPVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESST
EKINVVYRRKDGNYGLISPEIA

Sequences:

>Translated_182_residues
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGITIKAAEETNDMYASIDAVSDK
IERQLRRFKERIKAHKPAPDARERQVQKSIVEAQSIEEGAQAPVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESST
EKINVVYRRKDGNYGLISPEIA
>Mature_182_residues
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGITIKAAEETNDMYASIDAVSDK
IERQLRRFKERIKAHKPAPDARERQVQKSIVEAQSIEEGAQAPVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESST
EKINVVYRRKDGNYGLISPEIA

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=36.8421052631579, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20860; Mature: 20860

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCEE
IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARERQVQKSIVEAQSIEEGA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
QAPVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYRRKDGNYGLISPE
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEEECCCCCCCCCC
IA
CC
>Mature Secondary Structure
MQTTVTFRHMEPSDALKSYAEEKLERVKKYIDEPIVVQVFLTVEKIRHMAEVTITAKGIT
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCEE
IKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARERQVQKSIVEAQSIEEGA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
QAPVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYRRKDGNYGLISPE
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEEECCCCCCCCCC
IA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]