Click here to switch to the map view.

The map label for this gene is xylB [H]

Identifier: 197105941

GI number: 197105941

Start: 2842737

End: 2844380

Strand: Reverse

Name: xylB [H]

Synonym: PHZ_c2480

Alternate gene names: 197105941

Gene position: 2844380-2842737 (Counterclockwise)

Preceding gene: 197105942

Following gene: 197105940

Centisome position: 71.18

GC content: 72.38

Gene sequence:

>1644_bases
GTGCGGGGCGCGGTCGCCGCCGCCCTGCTGCTGGCCGGCCCGGTCGCCGCGGCCGAGGCGCGGTTCGACTGGTTCGAATA
CCAGGGCCGGGATCCCGCGGGCGCCGCCGCCGGTAACGGCGAGTACCGCAACCCGATCCTGACGGGCTTCTATCCCGACC
CCAGCATCACGCGCGTTGGCGGCGACTACTACCTCGTCACCTCGACCTTCGCCTACTTCCCGGGCCTGCCGGTGTTCCAC
AGCCGGGACCTGGTGAACTGGACCCAGATCGGCAACGCCATCGATCGCCCGACGCAGCTCGACTTCTCGGGCCTGGGGCT
GTCGCGCGCCGTGTTCGCCCCGGACATCACCTGGAAGGACGGGACGTTCTACATCCTGAACACCTGCGTGGACTGCGGCG
GCAACTATGTGATCACCGCCAGGGACCCCGCCGGCCCCTGGTCGGACCCCGTCTGGATCAGGGAGGTGGACGGCATCGAT
CCGGCCTTCTTCTTCGACGACGACGGCCGGGCCTACCTGCTCAACAACGGCCCGCCCGACGAGCCGCCGCGCTACGACGG
CCATCGCGCCATCTGGATGCAGGAGTTCGACCTTGCGGCGATGCGGCCGATCGGGCCGCGCAAGGTGCTGATCAACGGCG
GTGTCGACATCCTGACGAAGCCGGTGTGGATCGAGGGGCCGCACATCCTGAAGAAGGACGGCTGGTACTACCTGGTCTGC
GCCGAGGGTGGGACGTCGGTGAACCACTCCCAGGTCGTGCTGCGCAGCCGCCACGTCTGGGGCCCCTACGAGCCCTACGC
GGGCAACCCGATCCTCACCCAGCGCCACCTGCCCGAGGACCGGCCCGATCCGGTGACCTCGGCGGGCCACGCCGACCTGG
TCGACACGCCGTCCGGCGCGTGGTGGGCCACCTTCCTGGCGACCCGGCCCTACGCGGGCGACTTCTACAACACCGGCCGC
GAGACCTTCCTGCTGCCGGTGACCTGGAAGGACGGCTGGCCGGTGATCCTGGAAGGCGACGCCGTGATCCCGCAGGTCCA
CCCCCGGCCGGGCCTGCCGCCCTCGCCGGCGGCCCCCGACGGCCAGGGACGCGAGGCGTTCGACGGCGGCGAACTGGGCC
CGCACTGGATGACCCTGCGCACCCCGCGGGATCGCTGGCACAGGCTGTCGGAGGGGGCGCTGAGCCTGGAGGCGCGGGCC
GAGCCGCTGGGCGGCAAGGGCCAGCCGTCGTACCTCGGCCGGCGCCAGCAGCACACGCACGCCGTCGCATCGACGCGCGT
CGACTTCGACCCGGCCAGGGAAGGGGACCGCGCGGGTCTCGCGGCCCTGCAGAGCGAGGACTTCTTCTACCTGTTGAGCG
TCGGGCGGCAGGGCGGCCGCCGCGTCGTCCAGCTCGAGCGCCGGGCCGGCGCCGGCGATCCGCCGCACGGCGTCGTCTTG
GCCTCGGCGCCGCTGCCGGAGACGGGGGCGGTCGACCTGAGGATCGAGGCGCGTGGCGGACGCTACGACTTCGCCTATGC
GACGCGGCCGGGGCGATGGACCAGCCTCGTACAGGGCGCCGACGGCACGATCCTGTCGACCCGGACCGCCGGCGGCTTCG
TCGGCGTCACCTTCGGCCTCTACGCCTACGCCCCGGAGTCCTGA

Upstream 100 bases:

>100_bases
CCTACGACGACCGGCTGCGGTCCAAGCCCCTGCGCGAGGCCATGGCGGCCGCCTTCCGCGCCGCGCCGGAGCGGACGGCG
TGGGCGTGATCGGGGGAGCG

Downstream 100 bases:

>100_bases
TGTTCCCGATCTCGTGCCGCGCCCTGGGCCTGGCCGTCTTCGCCGCCGTCCTGGCCTTCGGATCCGCCGCGTCCGCTTGC
GACACGCCGGTGTCGGTGTG

Product: xylosidase/arabinosidase

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MRGAVAAALLLAGPVAAAEARFDWFEYQGRDPAGAAAGNGEYRNPILTGFYPDPSITRVGGDYYLVTSTFAYFPGLPVFH
SRDLVNWTQIGNAIDRPTQLDFSGLGLSRAVFAPDITWKDGTFYILNTCVDCGGNYVITARDPAGPWSDPVWIREVDGID
PAFFFDDDGRAYLLNNGPPDEPPRYDGHRAIWMQEFDLAAMRPIGPRKVLINGGVDILTKPVWIEGPHILKKDGWYYLVC
AEGGTSVNHSQVVLRSRHVWGPYEPYAGNPILTQRHLPEDRPDPVTSAGHADLVDTPSGAWWATFLATRPYAGDFYNTGR
ETFLLPVTWKDGWPVILEGDAVIPQVHPRPGLPPSPAAPDGQGREAFDGGELGPHWMTLRTPRDRWHRLSEGALSLEARA
EPLGGKGQPSYLGRRQQHTHAVASTRVDFDPAREGDRAGLAALQSEDFFYLLSVGRQGGRRVVQLERRAGAGDPPHGVVL
ASAPLPETGAVDLRIEARGGRYDFAYATRPGRWTSLVQGADGTILSTRTAGGFVGVTFGLYAYAPES

Sequences:

>Translated_547_residues
MRGAVAAALLLAGPVAAAEARFDWFEYQGRDPAGAAAGNGEYRNPILTGFYPDPSITRVGGDYYLVTSTFAYFPGLPVFH
SRDLVNWTQIGNAIDRPTQLDFSGLGLSRAVFAPDITWKDGTFYILNTCVDCGGNYVITARDPAGPWSDPVWIREVDGID
PAFFFDDDGRAYLLNNGPPDEPPRYDGHRAIWMQEFDLAAMRPIGPRKVLINGGVDILTKPVWIEGPHILKKDGWYYLVC
AEGGTSVNHSQVVLRSRHVWGPYEPYAGNPILTQRHLPEDRPDPVTSAGHADLVDTPSGAWWATFLATRPYAGDFYNTGR
ETFLLPVTWKDGWPVILEGDAVIPQVHPRPGLPPSPAAPDGQGREAFDGGELGPHWMTLRTPRDRWHRLSEGALSLEARA
EPLGGKGQPSYLGRRQQHTHAVASTRVDFDPAREGDRAGLAALQSEDFFYLLSVGRQGGRRVVQLERRAGAGDPPHGVVL
ASAPLPETGAVDLRIEARGGRYDFAYATRPGRWTSLVQGADGTILSTRTAGGFVGVTFGLYAYAPES
>Mature_547_residues
MRGAVAAALLLAGPVAAAEARFDWFEYQGRDPAGAAAGNGEYRNPILTGFYPDPSITRVGGDYYLVTSTFAYFPGLPVFH
SRDLVNWTQIGNAIDRPTQLDFSGLGLSRAVFAPDITWKDGTFYILNTCVDCGGNYVITARDPAGPWSDPVWIREVDGID
PAFFFDDDGRAYLLNNGPPDEPPRYDGHRAIWMQEFDLAAMRPIGPRKVLINGGVDILTKPVWIEGPHILKKDGWYYLVC
AEGGTSVNHSQVVLRSRHVWGPYEPYAGNPILTQRHLPEDRPDPVTSAGHADLVDTPSGAWWATFLATRPYAGDFYNTGR
ETFLLPVTWKDGWPVILEGDAVIPQVHPRPGLPPSPAAPDGQGREAFDGGELGPHWMTLRTPRDRWHRLSEGALSLEARA
EPLGGKGQPSYLGRRQQHTHAVASTRVDFDPAREGDRAGLAALQSEDFFYLLSVGRQGGRRVVQLERRAGAGDPPHGVVL
ASAPLPETGAVDLRIEARGGRYDFAYATRPGRWTSLVQGADGTILSTRTAGGFVGVTFGLYAYAPES

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=537, Percent_Identity=34.4506517690875, Blast_Score=253, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 59716; Mature: 59716

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAVAAALLLAGPVAAAEARFDWFEYQGRDPAGAAAGNGEYRNPILTGFYPDPSITRVG
CCHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEC
GDYYLVTSTFAYFPGLPVFHSRDLVNWTQIGNAIDRPTQLDFSGLGLSRAVFAPDITWKD
CCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECC
GTFYILNTCVDCGGNYVITARDPAGPWSDPVWIREVDGIDPAFFFDDDGRAYLLNNGPPD
CCEEEEEEHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCC
EPPRYDGHRAIWMQEFDLAAMRPIGPRKVLINGGVDILTKPVWIEGPHILKKDGWYYLVC
CCCCCCCCEEEEEEECCHHHCCCCCCEEEEEECCHHHEECCEEECCCEEEECCCEEEEEE
AEGGTSVNHSQVVLRSRHVWGPYEPYAGNPILTQRHLPEDRPDPVTSAGHADLVDTPSGA
CCCCCCCCHHEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
WWATFLATRPYAGDFYNTGRETFLLPVTWKDGWPVILEGDAVIPQVHPRPGLPPSPAAPD
EEEEEEECCCCCCCHHCCCCEEEEEEEEECCCCCEEEECCEECCCCCCCCCCCCCCCCCC
GQGREAFDGGELGPHWMTLRTPRDRWHRLSEGALSLEARAEPLGGKGQPSYLGRRQQHTH
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCHHHHHH
AVASTRVDFDPAREGDRAGLAALQSEDFFYLLSVGRQGGRRVVQLERRAGAGDPPHGVVL
HHHHEECCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEHHHCCCCCCCCCEEE
ASAPLPETGAVDLRIEARGGRYDFAYATRPGRWTSLVQGADGTILSTRTAGGFVGVTFGL
ECCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHEEECCCCCEEEEECCCCEEEEEEEE
YAYAPES
EEECCCC
>Mature Secondary Structure
MRGAVAAALLLAGPVAAAEARFDWFEYQGRDPAGAAAGNGEYRNPILTGFYPDPSITRVG
CCHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEC
GDYYLVTSTFAYFPGLPVFHSRDLVNWTQIGNAIDRPTQLDFSGLGLSRAVFAPDITWKD
CCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECC
GTFYILNTCVDCGGNYVITARDPAGPWSDPVWIREVDGIDPAFFFDDDGRAYLLNNGPPD
CCEEEEEEHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCC
EPPRYDGHRAIWMQEFDLAAMRPIGPRKVLINGGVDILTKPVWIEGPHILKKDGWYYLVC
CCCCCCCCEEEEEEECCHHHCCCCCCEEEEEECCHHHEECCEEECCCEEEECCCEEEEEE
AEGGTSVNHSQVVLRSRHVWGPYEPYAGNPILTQRHLPEDRPDPVTSAGHADLVDTPSGA
CCCCCCCCHHEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
WWATFLATRPYAGDFYNTGRETFLLPVTWKDGWPVILEGDAVIPQVHPRPGLPPSPAAPD
EEEEEEECCCCCCCHHCCCCEEEEEEEEECCCCCEEEECCEECCCCCCCCCCCCCCCCCC
GQGREAFDGGELGPHWMTLRTPRDRWHRLSEGALSLEARAEPLGGKGQPSYLGRRQQHTH
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCHHHHHH
AVASTRVDFDPAREGDRAGLAALQSEDFFYLLSVGRQGGRRVVQLERRAGAGDPPHGVVL
HHHHEECCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEHHHCCCCCCCCCEEE
ASAPLPETGAVDLRIEARGGRYDFAYATRPGRWTSLVQGADGTILSTRTAGGFVGVTFGL
ECCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHEEECCCCCEEEEECCCCEEEEEEEE
YAYAPES
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]