Click here to switch to the map view.

The map label for this gene is xynZ [H]

Identifier: 197105942

GI number: 197105942

Start: 2844392

End: 2845528

Strand: Reverse

Name: xynZ [H]

Synonym: PHZ_c2481

Alternate gene names: 197105942

Gene position: 2845528-2844392 (Counterclockwise)

Preceding gene: 197105943

Following gene: 197105941

Centisome position: 71.2

GC content: 73.53

Gene sequence:

>1137_bases
GTGACGTCAGCCGTTTCCCGCAGGCAGATGATGGCGCTCGCCGGCGCCGCGGCTCTGGCCGGGGGCGCGGCGCCGGCCGG
GGAGTCCCTGGACGCGCTGGCCCGGCGCAAGGGGGTGCGGTTCGGCACGGCGGTGGGGCTCGGCGAGACCCGCGGCAACA
GCTTCGACGATCCGGCCTTCCGGGCGCTGATCGCCCACGAGTGCGGGCTGATCGTCGCCGAGAACGAGCACAAGTGGTAC
GTGCTGCGCCCGTCGGCCGACAGCTACGACTTCGGCCCGGCGGACCGCCTGGCGGCGTTCGCGGCCGAGCGCGGCCTGGG
CCTGCGCGGCCACACCCTGCTCTGGAGCCGCGACGAGTTCTCGGCCAAGTGGCTGGCCGCGCACGACTTCGGCCCGCGGC
CGCGGGCGGCGGCCGAGCGGATGCTTGTCGAGCACATCCGCGCCGTCACAGCCCGCTATCCCCAGGTCGACTCCTGGGAC
GTCGTCAACGAGACGATCGACCCGGCGACGGGCGAACTGCGAGACACGATCCTCGGCCGGCAGATCGGGCCCGAGATCGT
CGAGATCGCCTTCCATGAGGCCAAGGCCGCCGCGCCCAAGGCCCGGCTGATCTACAACGACTACATGAATTTCGGCGACG
AGGAGGCGGTCCACCGCAAGGGCGTCCTCAAGCTGCTCGAGCGGCTCAAGGCCCGCGGCGTCCCGATCGACGCCCTGGGC
GTCCAGGGACACATCGGCGGAGGCGTGGACTCCACCCCGGTCGAGCGCTTCACCGCCGCAGACCAGCGCGACTGGCGCGC
CTTCCTCGACGAGGTCCGCGGCATGGGCCTGGACCTGCTGATCACCGAGTTCGACGTCAACTGCCGGGCCATGCCCGCCG
ACCTGGCGCGGCGCGACGCCGAGGTGGCGGCGCTCGGCGGCGACTTCCTCGGCATGATGCTGGACTACCGCGAGCTGAAG
CAGGTGCTCGTCTGGGGCCTGGCGGACGGGGCCTCCTGGCTGCAGGGCACGACGCCGCGGGCCGACGGCCTGCCCAAGCG
GCCGACGCCCTACGACGACCGGCTGCGGTCCAAGCCCCTGCGCGAGGCCATGGCGGCCGCCTTCCGCGCCGCGCCGGAGC
GGACGGCGTGGGCGTGA

Upstream 100 bases:

>100_bases
TGGGAGCGCTATCATTTCGCTTGATTGGTCTGACCACCTTGGGCACAAAACACCGACCTGAGCTCCGCACCAGACGGGGC
CTTCGTACGGAGGAAGCCTC

Downstream 100 bases:

>100_bases
TCGGGGGAGCGGTGCGGGGCGCGGTCGCCGCCGCCCTGCTGCTGGCCGGCCCGGTCGCCGCGGCCGAGGCGCGGTTCGAC
TGGTTCGAATACCAGGGCCG

Product: glycosyl hydrolase, family 10

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MTSAVSRRQMMALAGAAALAGGAAPAGESLDALARRKGVRFGTAVGLGETRGNSFDDPAFRALIAHECGLIVAENEHKWY
VLRPSADSYDFGPADRLAAFAAERGLGLRGHTLLWSRDEFSAKWLAAHDFGPRPRAAAERMLVEHIRAVTARYPQVDSWD
VVNETIDPATGELRDTILGRQIGPEIVEIAFHEAKAAAPKARLIYNDYMNFGDEEAVHRKGVLKLLERLKARGVPIDALG
VQGHIGGGVDSTPVERFTAADQRDWRAFLDEVRGMGLDLLITEFDVNCRAMPADLARRDAEVAALGGDFLGMMLDYRELK
QVLVWGLADGASWLQGTTPRADGLPKRPTPYDDRLRSKPLREAMAAAFRAAPERTAWA

Sequences:

>Translated_378_residues
MTSAVSRRQMMALAGAAALAGGAAPAGESLDALARRKGVRFGTAVGLGETRGNSFDDPAFRALIAHECGLIVAENEHKWY
VLRPSADSYDFGPADRLAAFAAERGLGLRGHTLLWSRDEFSAKWLAAHDFGPRPRAAAERMLVEHIRAVTARYPQVDSWD
VVNETIDPATGELRDTILGRQIGPEIVEIAFHEAKAAAPKARLIYNDYMNFGDEEAVHRKGVLKLLERLKARGVPIDALG
VQGHIGGGVDSTPVERFTAADQRDWRAFLDEVRGMGLDLLITEFDVNCRAMPADLARRDAEVAALGGDFLGMMLDYRELK
QVLVWGLADGASWLQGTTPRADGLPKRPTPYDDRLRSKPLREAMAAAFRAAPERTAWA
>Mature_377_residues
TSAVSRRQMMALAGAAALAGGAAPAGESLDALARRKGVRFGTAVGLGETRGNSFDDPAFRALIAHECGLIVAENEHKWYV
LRPSADSYDFGPADRLAAFAAERGLGLRGHTLLWSRDEFSAKWLAAHDFGPRPRAAAERMLVEHIRAVTARYPQVDSWDV
VNETIDPATGELRDTILGRQIGPEIVEIAFHEAKAAAPKARLIYNDYMNFGDEEAVHRKGVLKLLERLKARGVPIDALGV
QGHIGGGVDSTPVERFTAADQRDWRAFLDEVRGMGLDLLITEFDVNCRAMPADLARRDAEVAALGGDFLGMMLDYRELKQ
VLVWGLADGASWLQGTTPRADGLPKRPTPYDDRLRSKPLREAMAAAFRAAPERTAWA

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 41267; Mature: 41136

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAVSRRQMMALAGAAALAGGAAPAGESLDALARRKGVRFGTAVGLGETRGNSFDDPAF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEHEECCCCCCCCCCCCHHH
RALIAHECGLIVAENEHKWYVLRPSADSYDFGPADRLAAFAAERGLGLRGHTLLWSRDEF
HHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
SAKWLAAHDFGPRPRAAAERMLVEHIRAVTARYPQVDSWDVVNETIDPATGELRDTILGR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHH
QIGPEIVEIAFHEAKAAAPKARLIYNDYMNFGDEEAVHRKGVLKLLERLKARGVPIDALG
HCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
VQGHIGGGVDSTPVERFTAADQRDWRAFLDEVRGMGLDLLITEFDVNCRAMPADLARRDA
CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHCCC
EVAALGGDFLGMMLDYRELKQVLVWGLADGASWLQGTTPRADGLPKRPTPYDDRLRSKPL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHCCHH
REAMAAAFRAAPERTAWA
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSAVSRRQMMALAGAAALAGGAAPAGESLDALARRKGVRFGTAVGLGETRGNSFDDPAF
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEHEECCCCCCCCCCCCHHH
RALIAHECGLIVAENEHKWYVLRPSADSYDFGPADRLAAFAAERGLGLRGHTLLWSRDEF
HHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
SAKWLAAHDFGPRPRAAAERMLVEHIRAVTARYPQVDSWDVVNETIDPATGELRDTILGR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHH
QIGPEIVEIAFHEAKAAAPKARLIYNDYMNFGDEEAVHRKGVLKLLERLKARGVPIDALG
HCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
VQGHIGGGVDSTPVERFTAADQRDWRAFLDEVRGMGLDLLITEFDVNCRAMPADLARRDA
CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHCCC
EVAALGGDFLGMMLDYRELKQVLVWGLADGASWLQGTTPRADGLPKRPTPYDDRLRSKPL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHCCHH
REAMAAAFRAAPERTAWA
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]