Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

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The map label for this gene is fiu [H]

Identifier: 197105899

GI number: 197105899

Start: 2785652

End: 2787898

Strand: Reverse

Name: fiu [H]

Synonym: PHZ_c2438

Alternate gene names: 197105899

Gene position: 2787898-2785652 (Counterclockwise)

Preceding gene: 197105900

Following gene: 197105898

Centisome position: 69.76

GC content: 63.55

Gene sequence:

>2247_bases
ATGCACCACACCAGGGCCATTCTGGCCATCGGCACCGCGCTCGGATCGAGCCTCATCTGCTTCAGCGCCGCACAGGCGCA
GTCGGCGGCGCCAGCTGCGCAGTCGACGACCGCCGAAGGCGAACTCGCGGAGATCGTCGTCATCGCCCGAGGGCGGGCCG
AGTCGCTGCAGACCGTTCCGATCGCCGTTTCGAGCTTCGATGCGAAGACGATCGAAGACGCCGGCATCGAGCGCCCGGCT
GACTTCATCAGCTTCACGCCGAATGTCTCGGTGGCTGAGACCCAGCAGCCCGGCACGGCCTTCATCACCATTCGCGGCAT
CTCTCAGGTGCGCAACGGCGAATCCCCTGTGGCTGTCGTCGTGGACGGCGTGCTCCAGACGGTGAGCAACCAGTTCAACA
CTGAGCTTTTCGACCTGCAGCAGATCGAAGTCCTGAAGGGGCCGCAGGGCGCGCTCTACGGGCGCAACTCGATCGGCGGC
GCCATCGTCGTAACGACCCGAGCGCCCTCCGATGAGTTCTTCGGTCGCGTGACCGTCGGCGCCGGCAACGGTGATCAGCA
CAAGGCTCAGATCGGCGTGAGCGGCCCCATCATCGAGGGGAGGCTGTTCGGCAGCATCGCCGGCTCGTTCAGGAGCCGCG
AGGGCTTTCTTGAGAACGTCTACCTGAACAAGAAGGTGGACTTCCTGCGGGACACCGCCGTGCGCGGGCGCCTGATCTTC
GACGCGACCGATGCGCTCAAGATCGACTACCGGGCCTCCTACAACCGCACCCACTCAGGCGCCCTCTACTTCAAGCGCAA
CAACGTGCTGGCGTCGGGCTTCTACCAGTTCTATCCGACGGTCCGTTCAACGGCCTCGAACCCTGGGTCGCCGGACGACT
ACGGACCGCCCCTGAACTCCAACATCGATGGCGACGCGCTCCGCAAGATCTATTCGACGTCGCTGAAGGTCGATCTGGAG
ACCAGCCTCGGAACCCTGACGTCCACCTCGTCCTACGACGAGGTGAGCGAGCTGACGCTGGCGGACGCCAGCCCCTATAC
GAGCGCCGCGGCTGGCACACAGACCAGCAACTTCATGTGGTTCGCCAGGAGCACTGAACTGCGGCTGACGTCGCCCAGCG
ATCAGCGCCTGCGCTATATCGTCGGCGGCTACTACCTGGATCTCGCGCGTAAATCACGGCGAGCCAACGGCGTCGATACG
GGCCCAGGCATCGTTTTGCCGGGCTACAATCCGGCGAATTCGGTCAACCCATCGACCAACAACACGGCCGACAACAATGA
CCAGACCTCCTATGCCCTGTTCGGCCAGCTGAATTTCGACATCACCGAACAGCTCGAGCTCGCCGGCGCCATCCGTTACG
ATCACGACAAGCGGGACACGCTCAACGTCAGCCATCCGAAGGACGCGGGGTCGCTGCCCACGTACACGCCCGTCGGAACG
CCTGGCGCCTACCGCGAGGCTTCGTTCGACGCCTGGCAGCCGAAGGTCACCCTCCGGTACAAGATCGACAGCGGCACGTC
GGTCTACGCAAGCTACTCAAAGGGCTTCCGCAGCGGCGGATTCAACCAGGATGGCGTACGCGCCATCGCCCTGCGCCTGA
ACCCGAACTCCGCCGTGACGGATGACTACAAGAAGGAGATCTCCACCTCCTGGGAGGCCGGCTTCAAGGCGCGCTTCCTG
GACCGGCGACTGACGCTGAATGGTGCGGTGTTCCACACCAGGTTCAACAACGCGCAGTATTTCGTGTTCATCCCCGAGGC
TAGCGCCCAGATCATCACGAACATCGACAAGGCGACGATGAAGGGGGCTGAGCTCGACGTCAGCTTCCGGCCGATGACGG
GTTGGGAGATCTACGGCAACGTCGGCTACACCGACGCTGAAATCGACAAGTACGTTCAGCTGCCGGCTTCCGAGGGCAAG
ACCATGCCCTACGTGCCAAAGCTCGGATACAGCCTCGGCACCCAGTACACCTACGCGCTCACGGGTGACCTCGACCTCAT
CGGCCGCGTCGATCTGCACCACAAGGGCAGGCAGTACTGGGAGACCCTGAATACCGCCGGCGCGCGATCGGCCTTCAACC
TCGTCGACGCTCGCGTGTCCATCGCGGATGCCGATCGCAGATGGAAGCTGAGCGCCTGGACGAAGAACGCCTTCGACAAG
AAGTACCTCTCCGAGTTCGTCGGCGGTGGCTTCGCCTATCCGGGTGAGCCGCGCTCCTACGGGATCGAGCTCGACTACGA
GTTTTAG

Upstream 100 bases:

>100_bases
GCCAAGGAGCGGCCTGGTTACGACGTGCCGTCTCTCAAAGAGCGGCGCTAACCGGACGCCCCGTCGCGTTCAAAAAAAAC
ACTCAACAGGGGGCTTCATC

Downstream 100 bases:

>100_bases
GCAGGCGTTGCGGAGGGGTCAGCTGCGGCGCATCGCGTTGCGGCTGACCGCTCCGGCATTGAGAGTACGGGACGCGTGGC
GACAGAGGTCCCATGGCGTC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]

Number of amino acids: Translated: 748; Mature: 748

Protein sequence:

>748_residues
MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA
DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG
AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF
DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE
TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT
GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT
PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL
DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK
TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK
KYLSEFVGGGFAYPGEPRSYGIELDYEF

Sequences:

>Translated_748_residues
MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA
DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG
AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF
DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE
TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT
GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT
PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL
DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK
TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK
KYLSEFVGGGFAYPGEPRSYGIELDYEF
>Mature_748_residues
MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA
DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG
AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF
DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE
TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT
GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT
PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL
DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK
TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK
KYLSEFVGGGFAYPGEPRSYGIELDYEF

Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=384, Percent_Identity=24.7395833333333, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788478, Length=211, Percent_Identity=26.5402843601896, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81543; Mature: 81543

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVP
CCCCEEEEEEHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE
IAVSSFDAKTIEDAGIERPADFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVV
EEEECCCCCHHHHCCCCCCHHHEEECCCCCEEECCCCCEEEEEEEEHHHHCCCCCCEEEE
VDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGGAIVVTTRAPSDEFFGRVTVG
HHHHHHHHHHHHCCCHHCCEEEHEEECCCCCEECCCCCCCEEEEEECCCCHHHCEEEEEE
AGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF
CCCCCCCEEEECCCCCEECCEEHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHCCEEEE
DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNS
ECCCEEEEEEECCCCCCCCCEEEEEECCEEECCHHHHCCHHHHCCCCCCCCCCCCCCCCC
NIDGDALRKIYSTSLKVDLETSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMW
CCCHHHHHHHHHCCEEEEECCCCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCCEEE
FARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDTGPGIVLPGYNPANSVNPSTN
EEECCEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC
NTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT
CCCCCCCCCEEEEEEEECCCHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCCCCC
PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVT
CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCCCEEEEEEEECCCCCCC
DDYKKEISTSWEAGFKARFLDRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATM
CHHHHHHCCCCCCCCEEEEECCEEEECCEEEEEEECCCEEEEEECCCCCHHHHCCHHHHC
KGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGKTMPYVPKLGYSLGTQYTYAL
CCCEEEEEECCCCCEEEECCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
TGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK
ECCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCEEEEEHHHCCHHHH
KYLSEFVGGGFAYPGEPRSYGIELDYEF
HHHHHHHCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVP
CCCCEEEEEEHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE
IAVSSFDAKTIEDAGIERPADFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVV
EEEECCCCCHHHHCCCCCCHHHEEECCCCCEEECCCCCEEEEEEEEHHHHCCCCCCEEEE
VDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGGAIVVTTRAPSDEFFGRVTVG
HHHHHHHHHHHHCCCHHCCEEEHEEECCCCCEECCCCCCCEEEEEECCCCHHHCEEEEEE
AGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF
CCCCCCCEEEECCCCCEECCEEHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHCCEEEE
DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNS
ECCCEEEEEEECCCCCCCCCEEEEEECCEEECCHHHHCCHHHHCCCCCCCCCCCCCCCCC
NIDGDALRKIYSTSLKVDLETSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMW
CCCHHHHHHHHHCCEEEEECCCCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCCEEE
FARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDTGPGIVLPGYNPANSVNPSTN
EEECCEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC
NTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT
CCCCCCCCCEEEEEEEECCCHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCCCCC
PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVT
CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCCCEEEEEEEECCCCCCC
DDYKKEISTSWEAGFKARFLDRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATM
CHHHHHHCCCCCCCCEEEEECCEEEECCEEEEEEECCCEEEEEECCCCCHHHHCCHHHHC
KGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGKTMPYVPKLGYSLGTQYTYAL
CCCEEEEEECCCCCEEEECCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
TGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK
ECCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCEEEEEHHHCCHHHH
KYLSEFVGGGFAYPGEPRSYGIELDYEF
HHHHHHHCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]