| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105619
Identifier: 197105619
GI number: 197105619
Start: 2427232
End: 2428191
Strand: Reverse
Name: 197105619
Synonym: PHZ_c2156
Alternate gene names: NA
Gene position: 2428191-2427232 (Counterclockwise)
Preceding gene: 197105620
Following gene: 197105618
Centisome position: 60.76
GC content: 72.5
Gene sequence:
>960_bases ATGCCGTCCATGCCCCAACTCCATCGGCGAGGCTTCCTGGCGGCCGGAGCGGCCGCGGCGGGCCTGAGCATGGCGGGGGA GGCGGCCGCCGCGGCCTTCTTCGCCCGCACCGGCCTGCCGATCGGCGTGCAGCTCTACACCTTCGGCCCGGAGGGCATGA AGGACCTCGACGCGACCCTCGCGGCGGTCCGCGCCATCGGCTACCGCACGGTCGAGATCCCGGGCTTCATGGGCCGCACG GCCGCCGAGCTGAAGGCGGCGCTGGACCGGGCGGGCCTGGCCTGCCCAAGCGCCCACATCCAGGCCCGCGGCGGCTTCGA CGGCGACCTGGCCAAGCTGGCGGACGACCTCGCCACCCTCGGCGTCACCCAGGCGGTCATGCCCAGTCCCTACGTCCCCG ACCACGCGCGGAAGGCGGCGGAGGGCGCGAGCGGCGCCGACGTCTACCGCCGGATGATGGGCGCCCTGACCGGCGACGAC TGGAAGATGAACGCCGACTTCCTGAACGAGAAGGGCGCGGCGCTGAAGGCCTCCGGGATCACGGTCGGCTACCACAACCA CAACTTCGAGTTCGCGCCGCAGGAAGGCGCAGGGCAGGGCGGCCCGACCGGCCTCGACATCCTGCTGGCGCGCACGGATC CGGCGCTGGTCACCTTCCAGGCCGACGTCGGCTGGATGGCCGCGGCGGGTGTCGATCCCGCGGCCTATCTGCAGAAGCAC AAGGGTCGTTTCACGCTCATGCACGTGAAGGACGTGAAGGCCTCGACCCGGCCGAACTTCGACCTGCGCATGGAGCCCAC GGAAGTGGGCTCGGGGCGTCTCGACTGGAAGCGCCTGCTGCCGGCCGCGCACGCCGCCGGGGTGCGCGGCTTCTTCGTCG AGCAGGAGCCGCCGTTCGAACGGCCCCGGCTCGAGGCCGCCCGGATCAGCCACGACTTCCTGGGAGGGCTCCAGGCATGA
Upstream 100 bases:
>100_bases GCCGTGCTGCTGCTCGCGCTCTTCTTCCGCCCGCCGCAGAAGGGGCCCGCGGGTCCCGTCACGCCGTGACCGCTCCACCG ACAAGCGAAGGAGGCGCTCC
Downstream 100 bases:
>100_bases GCGTCCTGCGGCTGGCCATGGTCGGCGGCGGGCCGGGCGCTTTCATCGGCCCGGTGCACCGCATGGCCGCCGAGTTGGAC GGCCGCATCCGCCTGGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Xylose Isomerase Domain-Containing Protein; Sugar Phosphate Isomerase/Epimerase; Twin-Arginine Translocation Pathway Signal; Xylose Isomerase DomaiN-Containing Protein Tim Barrel; Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase Family Protein; AP Endonuclease Family 2 Superfamily; Sugar Phosphate Isomerase / Epimerase; Sugar Phosphate Isomerases/Epimerases; Xlose Isomerase Domain-Containing Protein; Xylose Isomerase Domain-Containing Protein Tim Barrel
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MPSMPQLHRRGFLAAGAAAAGLSMAGEAAAAAFFARTGLPIGVQLYTFGPEGMKDLDATLAAVRAIGYRTVEIPGFMGRT AAELKAALDRAGLACPSAHIQARGGFDGDLAKLADDLATLGVTQAVMPSPYVPDHARKAAEGASGADVYRRMMGALTGDD WKMNADFLNEKGAALKASGITVGYHNHNFEFAPQEGAGQGGPTGLDILLARTDPALVTFQADVGWMAAAGVDPAAYLQKH KGRFTLMHVKDVKASTRPNFDLRMEPTEVGSGRLDWKRLLPAAHAAGVRGFFVEQEPPFERPRLEAARISHDFLGGLQA
Sequences:
>Translated_319_residues MPSMPQLHRRGFLAAGAAAAGLSMAGEAAAAAFFARTGLPIGVQLYTFGPEGMKDLDATLAAVRAIGYRTVEIPGFMGRT AAELKAALDRAGLACPSAHIQARGGFDGDLAKLADDLATLGVTQAVMPSPYVPDHARKAAEGASGADVYRRMMGALTGDD WKMNADFLNEKGAALKASGITVGYHNHNFEFAPQEGAGQGGPTGLDILLARTDPALVTFQADVGWMAAAGVDPAAYLQKH KGRFTLMHVKDVKASTRPNFDLRMEPTEVGSGRLDWKRLLPAAHAAGVRGFFVEQEPPFERPRLEAARISHDFLGGLQA >Mature_318_residues PSMPQLHRRGFLAAGAAAAGLSMAGEAAAAAFFARTGLPIGVQLYTFGPEGMKDLDATLAAVRAIGYRTVEIPGFMGRTA AELKAALDRAGLACPSAHIQARGGFDGDLAKLADDLATLGVTQAVMPSPYVPDHARKAAEGASGADVYRRMMGALTGDDW KMNADFLNEKGAALKASGITVGYHNHNFEFAPQEGAGQGGPTGLDILLARTDPALVTFQADVGWMAAAGVDPAAYLQKHK GRFTLMHVKDVKASTRPNFDLRMEPTEVGSGRLDWKRLLPAAHAAGVRGFFVEQEPPFERPRLEAARISHDFLGGLQA
Specific function: Unknown
COG id: COG1082
COG function: function code G; Sugar phosphate isomerases/epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33683; Mature: 33552
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSMPQLHRRGFLAAGAAAAGLSMAGEAAAAAFFARTGLPIGVQLYTFGPEGMKDLDATL CCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHH AAVRAIGYRTVEIPGFMGRTAAELKAALDRAGLACPSAHIQARGGFDGDLAKLADDLATL HHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHH GVTQAVMPSPYVPDHARKAAEGASGADVYRRMMGALTGDDWKMNADFLNEKGAALKASGI HHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECHHHHCCCCCEEEECCE TVGYHNHNFEFAPQEGAGQGGPTGLDILLARTDPALVTFQADVGWMAAAGVDPAAYLQKH EEEEECCCCEECCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEECCCCHHHHHHHC KGRFTLMHVKDVKASTRPNFDLRMEPTEVGSGRLDWKRLLPAAHAAGVRGFFVEQEPPFE CCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHCCHHHHCCCCEEEECCCCCCC RPRLEAARISHDFLGGLQA CCCHHHHHHHHHHHCCCCC >Mature Secondary Structure PSMPQLHRRGFLAAGAAAAGLSMAGEAAAAAFFARTGLPIGVQLYTFGPEGMKDLDATL CCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHH AAVRAIGYRTVEIPGFMGRTAAELKAALDRAGLACPSAHIQARGGFDGDLAKLADDLATL HHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHH GVTQAVMPSPYVPDHARKAAEGASGADVYRRMMGALTGDDWKMNADFLNEKGAALKASGI HHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECHHHHCCCCCEEEECCE TVGYHNHNFEFAPQEGAGQGGPTGLDILLARTDPALVTFQADVGWMAAAGVDPAAYLQKH EEEEECCCCEECCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEECCCCHHHHHHHC KGRFTLMHVKDVKASTRPNFDLRMEPTEVGSGRLDWKRLLPAAHAAGVRGFFVEQEPPFE CCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHCCHHHHCCCCEEEECCCCCCC RPRLEAARISHDFLGGLQA CCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA