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The map label for this gene is yvrC [H]

Identifier: 197105379

GI number: 197105379

Start: 2146320

End: 2147327

Strand: Reverse

Name: yvrC [H]

Synonym: PHZ_c1916

Alternate gene names: 197105379

Gene position: 2147327-2146320 (Counterclockwise)

Preceding gene: 197105380

Following gene: 197105378

Centisome position: 53.73

GC content: 73.41

Gene sequence:

>1008_bases
CTGGCTGGCCGTGCTGCTCGCGGCGGACGCCCTGGCCCGGCGGTTCCTCGGGAGCGGGACCGGCTTCGGCGCCCCGAGGC
CCGCGTGAGCGCACAGCGGATCGTCTCACTGCTGCCCAGCGCCACCGAGATCGTGGCGACGCTGGGCCTGGCCGGCCGTC
TGGTGGGGCGCTCCCACCAGTGCGACTACCCGCCCGAGGTGGCGGCCTTGCCGGCGCTCAGCTCCACCAAGGTCCGGCTG
GATGGCGATTCCCGCGACATCCACCTGAGCGTGGAGGAGATCCTGACCCGCGCCGTCTCCGTGTACGACGTGGACGCCGC
GCGGCTGCGGGCGCTGCGGCCAGACGTCATCCTCACCCAGACCCAGTGCGCGATCTGCGCCGTGACGCCCGCCGACTTGG
AGGACGCCCTCCGTGACTGGACCGGCGCGCGCCCGGCGCTGGTCTCACTGGAGCCGGACGACCTGTCCGAGGTCTGGGGG
GACATGCTGCGGGTCGGTGAAGCGGTGGGCGCTTCGGACCGCGCCCGGGCCGCGGTCGAGGATCTTCAGGCCCGGCTGGA
GGCCATCCGGGCCCGGGCCGCCACGGCGGGCCGCCGGCCCCGGGTGGCCGCCATCGAATGGATCGAGCCGCTGATGGCGG
GTGGCAACTGGATGCCCGAACTGGTCGGGATCGCAGGCGGCGAGAGCCTGTTCGCGCAGCCGGGCGTGCACTCGCCCTGG
CTGGCCTGGGAGACGCTGGTCGGCGCCGACCCCGAGGTGATCGTCATCCTGCCCTGCGGCTTCCACCTGCCCCAGGGCCT
GAAGGACCTGGCGCTGCTGCGGGTCCGTCCGGAGTGGCGACGTCTCTCGGCCGTTCGGCGCGGCGAGGTCTATGTCGTCG
ACGGCCAGCACTTCTTCAACCGGCCCGGCCCGCGGCTGGTGGAATCCGCCGAAATCCTGGCTGAGATCCTGCATCCGGGT
CTCTTCGACTTCGGCCACGCCGGCCGCGATTGGCTGCGCGCGGCCTGA

Upstream 100 bases:

>100_bases
TGGCCAACCAGCTGGTCGTGCTCGGCGTGCAGCAGGTGGTCGAGGGCGCTTGCGAGATCGTCCCGGGGGTCATCAGCCGG
ATCGGCCTCCTCAACGCCGC

Downstream 100 bases:

>100_bases
TCCGGCGTCCCGGAGGCCAGCTAGGCCGTTGACCCGCGGCGGCGGCGCGGACCATGTTCCGCGCCCCAGGTGACCGGTAA
GCGTTGGAGTGGCGTTCGTG

Product: probable periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MAGRAARGGRPGPAVPRERDRLRRPEARVSAQRIVSLLPSATEIVATLGLAGRLVGRSHQCDYPPEVAALPALSSTKVRL
DGDSRDIHLSVEEILTRAVSVYDVDAARLRALRPDVILTQTQCAICAVTPADLEDALRDWTGARPALVSLEPDDLSEVWG
DMLRVGEAVGASDRARAAVEDLQARLEAIRARAATAGRRPRVAAIEWIEPLMAGGNWMPELVGIAGGESLFAQPGVHSPW
LAWETLVGADPEVIVILPCGFHLPQGLKDLALLRVRPEWRRLSAVRRGEVYVVDGQHFFNRPGPRLVESAEILAEILHPG
LFDFGHAGRDWLRAA

Sequences:

>Translated_335_residues
MAGRAARGGRPGPAVPRERDRLRRPEARVSAQRIVSLLPSATEIVATLGLAGRLVGRSHQCDYPPEVAALPALSSTKVRL
DGDSRDIHLSVEEILTRAVSVYDVDAARLRALRPDVILTQTQCAICAVTPADLEDALRDWTGARPALVSLEPDDLSEVWG
DMLRVGEAVGASDRARAAVEDLQARLEAIRARAATAGRRPRVAAIEWIEPLMAGGNWMPELVGIAGGESLFAQPGVHSPW
LAWETLVGADPEVIVILPCGFHLPQGLKDLALLRVRPEWRRLSAVRRGEVYVVDGQHFFNRPGPRLVESAEILAEILHPG
LFDFGHAGRDWLRAA
>Mature_334_residues
AGRAARGGRPGPAVPRERDRLRRPEARVSAQRIVSLLPSATEIVATLGLAGRLVGRSHQCDYPPEVAALPALSSTKVRLD
GDSRDIHLSVEEILTRAVSVYDVDAARLRALRPDVILTQTQCAICAVTPADLEDALRDWTGARPALVSLEPDDLSEVWGD
MLRVGEAVGASDRARAAVEDLQARLEAIRARAATAGRRPRVAAIEWIEPLMAGGNWMPELVGIAGGESLFAQPGVHSPWL
AWETLVGADPEVIVILPCGFHLPQGLKDLALLRVRPEWRRLSAVRRGEVYVVDGQHFFNRPGPRLVESAEILAEILHPGL
FDFGHAGRDWLRAA

Specific function: Probably part of an ABC transporter complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36410; Mature: 36279

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRAARGGRPGPAVPRERDRLRRPEARVSAQRIVSLLPSATEIVATLGLAGRLVGRSHQ
CCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
CDYPPEVAALPALSSTKVRLDGDSRDIHLSVEEILTRAVSVYDVDAARLRALRPDVILTQ
CCCCCCHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHCCCCEEEEE
TQCAICAVTPADLEDALRDWTGARPALVSLEPDDLSEVWGDMLRVGEAVGASDRARAAVE
CCEEEEEECCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLQARLEAIRARAATAGRRPRVAAIEWIEPLMAGGNWMPELVGIAGGESLFAQPGVHSPW
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCCCH
LAWETLVGADPEVIVILPCGFHLPQGLKDLALLRVRPEWRRLSAVRRGEVYVVDGQHFFN
HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHC
RPGPRLVESAEILAEILHPGLFDFGHAGRDWLRAA
CCCHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHCC
>Mature Secondary Structure 
AGRAARGGRPGPAVPRERDRLRRPEARVSAQRIVSLLPSATEIVATLGLAGRLVGRSHQ
CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
CDYPPEVAALPALSSTKVRLDGDSRDIHLSVEEILTRAVSVYDVDAARLRALRPDVILTQ
CCCCCCHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHCCCCEEEEE
TQCAICAVTPADLEDALRDWTGARPALVSLEPDDLSEVWGDMLRVGEAVGASDRARAAVE
CCEEEEEECCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLQARLEAIRARAATAGRRPRVAAIEWIEPLMAGGNWMPELVGIAGGESLFAQPGVHSPW
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCCCH
LAWETLVGADPEVIVILPCGFHLPQGLKDLALLRVRPEWRRLSAVRRGEVYVVDGQHFFN
HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHC
RPGPRLVESAEILAEILHPGLFDFGHAGRDWLRAA
CCCHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]