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The map label for this gene is yjcF [C]

Identifier: 197105319

GI number: 197105319

Start: 2079293

End: 2080297

Strand: Direct

Name: yjcF [C]

Synonym: PHZ_c1856

Alternate gene names: 197105319

Gene position: 2079293-2080297 (Clockwise)

Preceding gene: 197105318

Following gene: 197105321

Centisome position: 52.03

GC content: 73.73

Gene sequence:

>1005_bases
GTGACGACGCGTTCCGCCCGCCTGCTCCTCGCCAGCGCCGCCTTCGCGGCCGCCGCCGCCGTGGCCGGCCAGGCCGCTGC
GTTCGGCGACAAGGAGATCGCCCGCCAGACCTCGTTCGGCGGCTCGTGCGTGAAGTGCGAGCTGTCGGGCCGCAATCTGG
CCGGCGCGCGGATCGTCGGGGCCAACTTCTCGGGCGCGGCGCTGGTGGGGGCCAACCTGCGGGAGGCCAAGTTCCAGGCC
TCCAGCTTCGCGGGGGCCGACCTGTCGCGGGCCGACCTGAGCGACGCCGGAATGAGCGGCGCCAACTTCTCCGGCGCCAA
TCTCTCCAGCGCCCGGCTGCGGTCGACCGAAGCCCGCGGCGTGCACTTCGGCTCGGCGAACCTGACCCGCGCCGATCTCT
CTGACGTGGAAGCCACGGGCGCCAACTTCAGCCGGGCCGTCATGACCAATGCGGTGCTGCGCGCCGCCGAGATCCGCGGC
GGCCACTTCGGCTCGGCGAACCTCACCAACGCCATCCTGAACGACGTCGAGGCGGCGGGCGCGAACTTCAGCCGCGCCGT
GCTGCGCGGCGCGAGCTTTCGCGCCGCCTCCCTCAAGGCGACCCACCTGAGCAAGGTTGACGCCACCGGCGCGAACTTCC
AGGACGCCGACCTCGTCGCCGCCGATCTTTCAGGCGGCCGGTTCGACCGGGCGTCCTTCCGGGCGGCCGAGCTGAAGACC
GCGAACCTCTCGGGGGCCACCTTCGACGGAGCGGACTTCCGCGACGCCGGCCTGCGGCGGACGGTGATTGCGGGGGCCGA
CCTGTCGCGCGCGCGAGGCCTGACCCAGGATCAGCTCGACGACGCCTGCGGCGATGCCCGCACCAAGCTTCCGCGCGGAC
TGGTCGCGAAGACCTGCCACGGGGTGCGCGTGATCGTCAGGCCGCGCACGCCGCCGCCGCCCGATCCGCCGGAGCCCCCG
GCGCCGCCGGAGGCGCCCCGCTACTTCGTGGCGATCGGCGAGTAG

Upstream 100 bases:

>100_bases
GATCAGGCGCGCTAAGTCCCTCTAAGTTACCGCGATTTAAGTGGTGTTCGGCGTCCCGCCAGCGCAGAGGTGACGCCGGA
CTCCTGAGAGGATCGCCCCT

Downstream 100 bases:

>100_bases
CCGTAAGGCCCCCTAGCCTCAGGCCTTGATCGGCGGGGCCAGCCGGATGTGCAGCTCCTTGAGCTGCTTCTCGGAGACCT
CGGACGGCGCGTTCATCAGC

Product: pentapeptide repeat family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTTRSARLLLASAAFAAAAAVAGQAAAFGDKEIARQTSFGGSCVKCELSGRNLAGARIVGANFSGAALVGANLREAKFQA
SSFAGADLSRADLSDAGMSGANFSGANLSSARLRSTEARGVHFGSANLTRADLSDVEATGANFSRAVMTNAVLRAAEIRG
GHFGSANLTNAILNDVEAAGANFSRAVLRGASFRAASLKATHLSKVDATGANFQDADLVAADLSGGRFDRASFRAAELKT
ANLSGATFDGADFRDAGLRRTVIAGADLSRARGLTQDQLDDACGDARTKLPRGLVAKTCHGVRVIVRPRTPPPPDPPEPP
APPEAPRYFVAIGE

Sequences:

>Translated_334_residues
MTTRSARLLLASAAFAAAAAVAGQAAAFGDKEIARQTSFGGSCVKCELSGRNLAGARIVGANFSGAALVGANLREAKFQA
SSFAGADLSRADLSDAGMSGANFSGANLSSARLRSTEARGVHFGSANLTRADLSDVEATGANFSRAVMTNAVLRAAEIRG
GHFGSANLTNAILNDVEAAGANFSRAVLRGASFRAASLKATHLSKVDATGANFQDADLVAADLSGGRFDRASFRAAELKT
ANLSGATFDGADFRDAGLRRTVIAGADLSRARGLTQDQLDDACGDARTKLPRGLVAKTCHGVRVIVRPRTPPPPDPPEPP
APPEAPRYFVAIGE
>Mature_333_residues
TTRSARLLLASAAFAAAAAVAGQAAAFGDKEIARQTSFGGSCVKCELSGRNLAGARIVGANFSGAALVGANLREAKFQAS
SFAGADLSRADLSDAGMSGANFSGANLSSARLRSTEARGVHFGSANLTRADLSDVEATGANFSRAVMTNAVLRAAEIRGG
HFGSANLTNAILNDVEAAGANFSRAVLRGASFRAASLKATHLSKVDATGANFQDADLVAADLSGGRFDRASFRAAELKTA
NLSGATFDGADFRDAGLRRTVIAGADLSRARGLTQDQLDDACGDARTKLPRGLVAKTCHGVRVIVRPRTPPPPDPPEPPA
PPEAPRYFVAIGE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=173, Percent_Identity=28.9017341040462, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221377802, Length=172, Percent_Identity=26.7441860465116, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 34234; Mature: 34102

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRSARLLLASAAFAAAAAVAGQAAAFGDKEIARQTSFGGSCVKCELSGRNLAGARIVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEEC
ANFSGAALVGANLREAKFQASSFAGADLSRADLSDAGMSGANFSGANLSSARLRSTEARG
CCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCC
VHFGSANLTRADLSDVEATGANFSRAVMTNAVLRAAEIRGGHFGSANLTNAILNDVEAAG
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ANFSRAVLRGASFRAASLKATHLSKVDATGANFQDADLVAADLSGGRFDRASFRAAELKT
CCHHHHHHCCCCCCHHEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEEE
ANLSGATFDGADFRDAGLRRTVIAGADLSRARGLTQDQLDDACGDARTKLPRGLVAKTCH
CCCCCCCCCCCCCHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCC
GVRVIVRPRTPPPPDPPEPPAPPEAPRYFVAIGE
CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TTRSARLLLASAAFAAAAAVAGQAAAFGDKEIARQTSFGGSCVKCELSGRNLAGARIVG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEEC
ANFSGAALVGANLREAKFQASSFAGADLSRADLSDAGMSGANFSGANLSSARLRSTEARG
CCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCCC
VHFGSANLTRADLSDVEATGANFSRAVMTNAVLRAAEIRGGHFGSANLTNAILNDVEAAG
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ANFSRAVLRGASFRAASLKATHLSKVDATGANFQDADLVAADLSGGRFDRASFRAAELKT
CCHHHHHHCCCCCCHHEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEEE
ANLSGATFDGADFRDAGLRRTVIAGADLSRARGLTQDQLDDACGDARTKLPRGLVAKTCH
CCCCCCCCCCCCCHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCC
GVRVIVRPRTPPPPDPPEPPAPPEAPRYFVAIGE
CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA