| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is gltX
Identifier: 197105227
GI number: 197105227
Start: 1973925
End: 1975331
Strand: Direct
Name: gltX
Synonym: PHZ_c1764
Alternate gene names: 197105227
Gene position: 1973925-1975331 (Clockwise)
Preceding gene: 197105225
Following gene: 197105228
Centisome position: 49.39
GC content: 70.08
Gene sequence:
>1407_bases ATGCCTGACCGTCCCGTCCGCACCCGGATCGCCCCCTCGCCTACCGGCATGATGCACATTGGCACGGCGAGGACCGCCCT GTTCAACTGGCTTTATGCCCGCCACACGGGCGGCAAGTTCCTGCTGCGCATCGAGGACACCGACCGGGAGCGTTCGACCG ACGAGGCGGTGAAGGTGATCTTCGACGGCCTGAAATGGCTGGGCCTGGACGCCGACGAGCCGCCGGTGTTCCAGTTCGCC CGGGCCGACCGGCACCGCGAGGCCGCCGAGACGCTGCTGGCGCGCGGCGGCGCCTATCGTGATTACATGACGCCCGAGGA GCTGGAGGCGGAGCGTGAGGTGGCGCGCGCCGAGGGCCGGGTCGTCCGCTCGCCCTGGCGCGACGCCTCGCCCAACGACG CCCCCGACCGCCCGTTCGTGGTGCGGCTGAAGGCGCCGCAGGAGGGCGAGACTGTCATCCAGGACGCGGTGAAGGGCGAG GTCCGGTTCCAGAACAAGCAGCTGGACGACCTGATCCTGCTGCGCACCGACGGCACCCCCACCTACAACCTCGCCGTGGT CGTGGACGACCACGACATGGGCGTGACGCACGTGATCCGCGGCGACGACCACCTGAACAACGCCGCCCGCCAGACGCTGA TCTATCAAGGCCTCGGCTGGGAGGTCCCGGTGTGGGCGCACCTGCCGCTGATCCACGGCCCCGACGGAGCGAAGCTGTCG AAGCGCCACGGCGCCCAGGCGGTCAGCGAGTTCGACTCCATGGGCTACCTGCCCGAGACCATGCGCAACTACCTGGCCAA GCTGGGCTGGGGCCACGGGGACGACGAGATCTTTTCGGATGAGCAGGCGATCGCCTGGTTCGACATCAATGACGTGGTCA GCGCGCCGGCCCGCCTCGACTGGGCCAAGCTGAACCACCTGAACAACCACTACATCCGCCAGGCCGAACCCGCGCGCCTC GCCGAGCTGGTCAAGACGGTGCTGGCGAGCCGCGACTGGCCCCTCGAGGCCGGGGACATGGCGGTGATCGAGCGCACGAT CCCCTTCGTCCGCGACGGCGCCAAGACGACGCTGGAGCTGGCCGACAACGTCGTCTTCGCGCTCAAGCGCCGGCCGCTCG AGCTGCCCGAGAAGACCCGGACGCAGATGACCGAGGAGCTGCGCGGGCGCCTTTCGCGCCTGCGGGAGGCGCTGGCCGCT GTCGAATACTGGGACGTGCCGTCGCTCGAGGCGGCGCTGCGGGCGTTCGCGGAAGCCGAAGGCGTGGGCCTGGGCAAGTT CGGACCGCAGCTGCGCGCCGTGCTTTCCGGCGGCGCGCCGGCCCCCGATCTCGCAGGCGCGATGGTCGCGCTGACCCGCG ACGAAAGTCTAGGACGGCTCGACGATGCGCTTTCACCGTCCGCGTAA
Upstream 100 bases:
>100_bases GCGGAGGCTGGAAGCACGCCGAATCCGCATGCTAAGAGGCGCCCCCAAGTGTTCAGCTCCGGCGTTATCCGCCAGGGCCG CCCCAACCCCTCCGAGATCG
Downstream 100 bases:
>100_bases ACCGCTATAAGGCCGCTCGAACGAGCGTTTCATCTCGCACCCGCGAAAGGAGTCCGCATGGGCGACACGGCGAAGATCGG CATCGGCGGCAAGGACGTTG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MPDRPVRTRIAPSPTGMMHIGTARTALFNWLYARHTGGKFLLRIEDTDRERSTDEAVKVIFDGLKWLGLDADEPPVFQFA RADRHREAAETLLARGGAYRDYMTPEELEAEREVARAEGRVVRSPWRDASPNDAPDRPFVVRLKAPQEGETVIQDAVKGE VRFQNKQLDDLILLRTDGTPTYNLAVVVDDHDMGVTHVIRGDDHLNNAARQTLIYQGLGWEVPVWAHLPLIHGPDGAKLS KRHGAQAVSEFDSMGYLPETMRNYLAKLGWGHGDDEIFSDEQAIAWFDINDVVSAPARLDWAKLNHLNNHYIRQAEPARL AELVKTVLASRDWPLEAGDMAVIERTIPFVRDGAKTTLELADNVVFALKRRPLELPEKTRTQMTEELRGRLSRLREALAA VEYWDVPSLEAALRAFAEAEGVGLGKFGPQLRAVLSGGAPAPDLAGAMVALTRDESLGRLDDALSPSA
Sequences:
>Translated_468_residues MPDRPVRTRIAPSPTGMMHIGTARTALFNWLYARHTGGKFLLRIEDTDRERSTDEAVKVIFDGLKWLGLDADEPPVFQFA RADRHREAAETLLARGGAYRDYMTPEELEAEREVARAEGRVVRSPWRDASPNDAPDRPFVVRLKAPQEGETVIQDAVKGE VRFQNKQLDDLILLRTDGTPTYNLAVVVDDHDMGVTHVIRGDDHLNNAARQTLIYQGLGWEVPVWAHLPLIHGPDGAKLS KRHGAQAVSEFDSMGYLPETMRNYLAKLGWGHGDDEIFSDEQAIAWFDINDVVSAPARLDWAKLNHLNNHYIRQAEPARL AELVKTVLASRDWPLEAGDMAVIERTIPFVRDGAKTTLELADNVVFALKRRPLELPEKTRTQMTEELRGRLSRLREALAA VEYWDVPSLEAALRAFAEAEGVGLGKFGPQLRAVLSGGAPAPDLAGAMVALTRDESLGRLDDALSPSA >Mature_467_residues PDRPVRTRIAPSPTGMMHIGTARTALFNWLYARHTGGKFLLRIEDTDRERSTDEAVKVIFDGLKWLGLDADEPPVFQFAR ADRHREAAETLLARGGAYRDYMTPEELEAEREVARAEGRVVRSPWRDASPNDAPDRPFVVRLKAPQEGETVIQDAVKGEV RFQNKQLDDLILLRTDGTPTYNLAVVVDDHDMGVTHVIRGDDHLNNAARQTLIYQGLGWEVPVWAHLPLIHGPDGAKLSK RHGAQAVSEFDSMGYLPETMRNYLAKLGWGHGDDEIFSDEQAIAWFDINDVVSAPARLDWAKLNHLNNHYIRQAEPARLA ELVKTVLASRDWPLEAGDMAVIERTIPFVRDGAKTTLELADNVVFALKRRPLELPEKTRTQMTEELRGRLSRLREALAAV EYWDVPSLEAALRAFAEAEGVGLGKFGPQLRAVLSGGAPAPDLAGAMVALTRDESLGRLDDALSPSA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=509, Percent_Identity=30.0589390962672, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI62241042, Length=264, Percent_Identity=26.5151515151515, Blast_Score=72, Evalue=9e-13, Organism=Escherichia coli, GI1788743, Length=466, Percent_Identity=41.8454935622318, Blast_Score=361, Evalue=1e-101, Organism=Escherichia coli, GI226510925, Length=285, Percent_Identity=35.4385964912281, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1786895, Length=208, Percent_Identity=25.9615384615385, Blast_Score=66, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71993394, Length=330, Percent_Identity=35.1515151515151, Blast_Score=180, Evalue=1e-45, Organism=Saccharomyces cerevisiae, GI6324540, Length=497, Percent_Identity=31.3883299798793, Blast_Score=238, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321192, Length=236, Percent_Identity=26.6949152542373, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24665321, Length=485, Percent_Identity=32.1649484536082, Blast_Score=223, Evalue=2e-58,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_PHEZH (B4RBX8)
Other databases:
- EMBL: CP000747 - RefSeq: YP_002130604.1 - GeneID: 6791277 - GenomeReviews: CP000747_GR - KEGG: pzu:PHZ_c1764 - HOGENOM: HBG628189 - OMA: MAHIPLI - ProtClustDB: PRK01406 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 52075; Mature: 51944
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 241-241
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDRPVRTRIAPSPTGMMHIGTARTALFNWLYARHTGGKFLLRIEDTDRERSTDEAVKVI CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHEECCCEEEEEEECCCCCCCHHHHHHHH FDGLKWLGLDADEPPVFQFARADRHREAAETLLARGGAYRDYMTPEELEAEREVARAEGR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC VVRSPWRDASPNDAPDRPFVVRLKAPQEGETVIQDAVKGEVRFQNKQLDDLILLRTDGTP EEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCCCEEEEEECCCC TYNLAVVVDDHDMGVTHVIRGDDHLNNAARQTLIYQGLGWEVPVWAHLPLIHGPDGAKLS CEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEECCEEECCCCCCHH KRHGAQAVSEFDSMGYLPETMRNYLAKLGWGHGDDEIFSDEQAIAWFDINDVVSAPARLD HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCC WAKLNHLNNHYIRQAEPARLAELVKTVLASRDWPLEAGDMAVIERTIPFVRDGAKTTLEL HHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH ADNVVFALKRRPLELPEKTRTQMTEELRGRLSRLREALAAVEYWDVPSLEAALRAFAEAE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC GVGLGKFGPQLRAVLSGGAPAPDLAGAMVALTRDESLGRLDDALSPSA CCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCC >Mature Secondary Structure PDRPVRTRIAPSPTGMMHIGTARTALFNWLYARHTGGKFLLRIEDTDRERSTDEAVKVI CCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHEECCCEEEEEEECCCCCCCHHHHHHHH FDGLKWLGLDADEPPVFQFARADRHREAAETLLARGGAYRDYMTPEELEAEREVARAEGR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC VVRSPWRDASPNDAPDRPFVVRLKAPQEGETVIQDAVKGEVRFQNKQLDDLILLRTDGTP EEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCCCEEEEEECCCC TYNLAVVVDDHDMGVTHVIRGDDHLNNAARQTLIYQGLGWEVPVWAHLPLIHGPDGAKLS CEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEECCEEECCCCCCHH KRHGAQAVSEFDSMGYLPETMRNYLAKLGWGHGDDEIFSDEQAIAWFDINDVVSAPARLD HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCC WAKLNHLNNHYIRQAEPARLAELVKTVLASRDWPLEAGDMAVIERTIPFVRDGAKTTLEL HHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH ADNVVFALKRRPLELPEKTRTQMTEELRGRLSRLREALAAVEYWDVPSLEAALRAFAEAE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC GVGLGKFGPQLRAVLSGGAPAPDLAGAMVALTRDESLGRLDDALSPSA CCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA