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The map label for this gene is ihfA

Identifier: 197105121

GI number: 197105121

Start: 1864962

End: 1865264

Strand: Reverse

Name: ihfA

Synonym: PHZ_c1658

Alternate gene names: 197105121

Gene position: 1865264-1864962 (Counterclockwise)

Preceding gene: 197105122

Following gene: 197105120

Centisome position: 46.68

GC content: 71.29

Gene sequence:

>303_bases
ATGAAGGGGGCGACGGTCACCCGGGCCGACCTCTGCGAGGCGGTCCACGAGCAGGTGGGCCTCACCCGCCAGGACTGCGC
GGAACTCGTCGAACGGGTCCTCGAACTGATGTGCCAGGCCCTCGAGCGGGGCGAGCAGGTGAAGCTCTCGGGCTTCGGCG
TCTTCCAGGTCCGCTCCAAGCGCGCCCGCATGGGCCGCAATCCCAAGACCGGCGAGCCCGCCGCCATCGAACCGCGCCGC
GTGATCGGCTTCCGCGCCTCGCAGGTGATGAAGGCGCGGGTCGACCAGGCGCTGTCGCGGTGA

Upstream 100 bases:

>100_bases
CTAGCGCTTAACCACCGCCCGCAAAGCGTGACTTGAAGTCTTTGAGCCGATAGGACAATCAAGGTCCATGAACGATGTCT
CGTCGGGGGTCAGCGCAAGG

Downstream 100 bases:

>100_bases
GGGCGCCTTAGGCCGTGGCCAAGGGCCCGGACGCCTTCCGCACCATCTCGGAAGCGGCCGAAGAGCTGAACGTGCCGCAG
CATGTCCTGCGGTTCTGGGA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MKGATVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARMGRNPKTGEPAAIEPRR
VIGFRASQVMKARVDQALSR

Sequences:

>Translated_100_residues
MKGATVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARMGRNPKTGEPAAIEPRR
VIGFRASQVMKARVDQALSR
>Mature_100_residues
MKGATVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARMGRNPKTGEPAAIEPRR
VIGFRASQVMKARVDQALSR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=51.0869565217391, Blast_Score=98, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_PHEZH (B4RB18)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002130498.1
- GeneID:   6791170
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c1658
- HOGENOM:   HBG705085
- OMA:   RDKSARV
- ProtClustDB:   PRK00285
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11125; Mature: 11125

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGATVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSK
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
RARMGRNPKTGEPAAIEPRRVIGFRASQVMKARVDQALSR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGATVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSK
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
RARMGRNPKTGEPAAIEPRRVIGFRASQVMKARVDQALSR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA