Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 197104769

GI number: 197104769

Start: 1482529

End: 1482858

Strand: Reverse

Name: clpS

Synonym: PHZ_c1303

Alternate gene names: 197104769

Gene position: 1482858-1482529 (Counterclockwise)

Preceding gene: 197104770

Following gene: 197104768

Centisome position: 37.11

GC content: 56.06

Gene sequence:

>330_bases
ATGAGCGAACGCAAGGAAGGTGACTCCGGCGCCGGCGTTCGGTCAGCGGTGATCACCCAGACGAAGCCGAAGACGCAGAA
GCCCGCGATGTACCGGGTTCTGCTTTTGAACGACGACTACACGCCGATGGAATTCGTCGTGTACGTACTTGAGCAGTTCT
TCAATAAGTCGCGCGAAGACGCGACTCGCATAATGCTACATGTCCATCAACACGGCGTGGGTGTGTGCGGAGTCTACACA
TACGAAGTGGCGGAAACAAAAGTGGCCCAGGTCGTTGATACGGCGCGGCGGCACCAACATCCGCTGCAATGCACCATGGA
AAAGGATTAA

Upstream 100 bases:

>100_bases
CGTTCACCCCCGGCGTGACGATTCGACCCTTCCAAATGACCGCATCTTCCATATCTAATCGAAGTGGACGCATCCTCGGC
GACCACAGGAGATCGAAGGC

Downstream 100 bases:

>100_bases
GGCCCTTTGCCTTCATTTTCGCGCCAGCTCGAAGAGTCCCTGCACCGCGCGGTCGCCTACGCCAACCAGCGTAAGCATGA
ATACGCCACCCTGGAGCACC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSREDATRIMLHVHQHGVGVCGVYT
YEVAETKVAQVVDTARRHQHPLQCTMEKD

Sequences:

>Translated_109_residues
MSERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSREDATRIMLHVHQHGVGVCGVYT
YEVAETKVAQVVDTARRHQHPLQCTMEKD
>Mature_108_residues
SERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSREDATRIMLHVHQHGVGVCGVYTY
EVAETKVAQVVDTARRHQHPLQCTMEKD

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=81, Percent_Identity=60.4938271604938, Blast_Score=108, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_PHEZH (B4R947)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002130146.1
- GeneID:   6790807
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c1303
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12442; Mature: 12311

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSRED
CCCCCCCCCCCCCHHHEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHH
ATRIMLHVHQHGVGVCGVYTYEVAETKVAQVVDTARRHQHPLQCTMEKD
HHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCC
>Mature Secondary Structure 
SERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSRED
CCCCCCCCCCCCHHHEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHH
ATRIMLHVHQHGVGVCGVYTYEVAETKVAQVVDTARRHQHPLQCTMEKD
HHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA