| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is pccA [H]
Identifier: 197104744
GI number: 197104744
Start: 1454632
End: 1456605
Strand: Direct
Name: pccA [H]
Synonym: PHZ_c1278
Alternate gene names: 197104744
Gene position: 1454632-1456605 (Clockwise)
Preceding gene: 197104741
Following gene: 197104745
Centisome position: 36.4
GC content: 68.79
Gene sequence:
>1974_bases ATGTTTTCGAAGATCCTGATTGCGAACCGGGGCGAGATCGCCGTCCGGATCATCAAGACCTGCCGGCGGATGGGGATCGC CACGGTGGTCGTCTACTCCGAGGCCGACGCCGATTCGATGGCGGTGGAGATGGCGGATGAGGCGGTCTTCATCGGCCCGC CCCCGGCGGCCCAGAGCTATCTGCTGCAGGACAAGATCGTGGAGGCGGTGCGCCAGACGGGCGCCGAGGCCGTCCACCCG GGATTCGGCTTCCTGTCCGAGAACGCGTCCTTCGCCCGCCGGCTGGCCGCCGAGAACATCGTCTTCATCGGCCCCAATCC CCAGGCCATCGAGGCCATGGGCGACAAGATCGAGTCCAAGAAGTTCGCCGCCAAGGCCGGCGTCTCGACGGTGCCGGGCC ACGTGGGCGAGATCGACGACACGGGCCACGCCATCCGCATCTCCGAGGAGATCGGCTATCCGGTGATGATCAAGGCCTCG GCCGGGGGCGGGGGCAAGGGCATCCGCGTCGCCTGGAGCCGGCAGGACGTGGAGGAAGGATTTCCCGCCGTCCGCGCCGA GGCCAAGGCCAGCTTCGGCGACGACCGCATCTTCATCGAGAAGTTCATCGAGAGCCCGCGCCACGTCGAGATCCAGGTGC TGGGGGACAAGCACGGCAACGTCGTCCACCTGTTCGAGCGCGAGTGCTCGATCCAGCGCCGCAACCAGAAGGTCGTCGAG GAGGCTCCCAGCCCGCTGCTGGACGAGAAGACCCGCAAGGCGATGGGCGACCAGGCCGTCGCCCTGGCCAAGGCCGTAGG CTACGACAGCGCCGGCACCGTCGAGTTCGTGGCGGGCCAGGACCGCAGCTTCTTTTTCCTCGAGATGAACACCCGCCTGC AGGTGGAGCATCCGGTGACCGAGCTGATCACCGGGGTGGACCTGGTCGAGCAGATGATCCGCGTGGCCGCCGGCGAGACG CTGCCCTTCGCCCAGGACGACCTGAAGATCGACGGCTGGGCCATGGAAAGCCGGATTTACGCCGAGGACCCGTACCGCGG CTTCCTGCCCTCGATCGGCCGTCTCGTCCGCTACGACCCGCCGACCGAGGGGCCGGTGAAGGAGGGGATCGTCCGCAACG ACGCCGGCGTGCGCGAGGGGGACGAGATCTCGATGTTCTACGATCCGATGATCTCGAAGCTGTCCACTTGGGGGAAGACC CGCGACGCGGCCATCGACGCCATGGGTCGGGCCCTCGAGGACTTCCACATCGAGGGCCTGGGCCACAACATCCCGTTCCT GGCGGCGGTGATGGACCAGGACCGCTTCCGGTCGGGCAAGCTGTCGACGAACTACATCAAGGACGAGTTCCCGGACGGCT TCCACGGACTCGAGCCCACGGAGGCCCAGCGCGACCTCATGGGGGCCGTGGCCGTCGCCATGCACCGCACGCTGGTGGCC CGGCAGGCGCCCGCGCTCGCCCGCGACGAGTGGATCGAGGTGGTCGGACACGAGAAGCGCCCCGTGCGGGTGCGCTCCGA GAGCGAGGCCCTCGTGGTCGAGAGGCCGGGACGCGACACCCGGCTGACAGACATCGACTGGCGGCCGGGCCGACCGCTGT TCCGCGGCAAGGTGGACGGCGAGCCCTTCACCGCGACGGTCAAGCCGGCCGCCGAGGGCTTCGTGATCCGCCACCGCGCC GCCCAGGCCCACGTGCTGGTGCTGACGCCGCGCTCGGCCGAGCTGCACGAGAAGCTGCCGCCGAAGAAGGCGGCCGACAC CTCCAAGATGGTGCTCTCGCCGATGCCGGGTCTGGTCGTCTCGATCGACGTGGCGACCGGCCAGGAGGTCAAGACCGGCG AGGTCGTCGCCGTCCTCGAGGCCATGAAGATGCAGAACATCATCCGCGCCGAGCGCGACGGGGTGGTGAAGGCGGTCGGC GCCAAGCCGGGCGACAGCGTCGCGGCCGACGAGGTTCTGGTAGAGTTCGCCTAA
Upstream 100 bases:
>100_bases ATGGACGCCAATCTAAGGTCGCCCCTTCGCGAGCGGAAGACGCGGGAGGCCGATTGCGCCTCCTTTGGCGGCCTGTGGGC TGTAGGGCGTAAGGGACGGA
Downstream 100 bases:
>100_bases GGGAATCGCCAGGCGGGGGCGCCATGAACGGCCAGACGGGCTTCGGGGAGCTTTTCCTCTCGGCGAACGGGCGGGCGTCG CGCCTGCCGTCGACCCTGGC
Product: propionyl-CoA carboxylase, alpha subunit
Products: NA
Alternate protein names: Pyruvic carboxylase A [H]
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSMAVEMADEAVFIGPPPAAQSYLLQDKIVEAVRQTGAEAVHP GFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESKKFAAKAGVSTVPGHVGEIDDTGHAIRISEEIGYPVMIKAS AGGGGKGIRVAWSRQDVEEGFPAVRAEAKASFGDDRIFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQKVVE EAPSPLLDEKTRKAMGDQAVALAKAVGYDSAGTVEFVAGQDRSFFFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGET LPFAQDDLKIDGWAMESRIYAEDPYRGFLPSIGRLVRYDPPTEGPVKEGIVRNDAGVREGDEISMFYDPMISKLSTWGKT RDAAIDAMGRALEDFHIEGLGHNIPFLAAVMDQDRFRSGKLSTNYIKDEFPDGFHGLEPTEAQRDLMGAVAVAMHRTLVA RQAPALARDEWIEVVGHEKRPVRVRSESEALVVERPGRDTRLTDIDWRPGRPLFRGKVDGEPFTATVKPAAEGFVIRHRA AQAHVLVLTPRSAELHEKLPPKKAADTSKMVLSPMPGLVVSIDVATGQEVKTGEVVAVLEAMKMQNIIRAERDGVVKAVG AKPGDSVAADEVLVEFA
Sequences:
>Translated_657_residues MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSMAVEMADEAVFIGPPPAAQSYLLQDKIVEAVRQTGAEAVHP GFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESKKFAAKAGVSTVPGHVGEIDDTGHAIRISEEIGYPVMIKAS AGGGGKGIRVAWSRQDVEEGFPAVRAEAKASFGDDRIFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQKVVE EAPSPLLDEKTRKAMGDQAVALAKAVGYDSAGTVEFVAGQDRSFFFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGET LPFAQDDLKIDGWAMESRIYAEDPYRGFLPSIGRLVRYDPPTEGPVKEGIVRNDAGVREGDEISMFYDPMISKLSTWGKT RDAAIDAMGRALEDFHIEGLGHNIPFLAAVMDQDRFRSGKLSTNYIKDEFPDGFHGLEPTEAQRDLMGAVAVAMHRTLVA RQAPALARDEWIEVVGHEKRPVRVRSESEALVVERPGRDTRLTDIDWRPGRPLFRGKVDGEPFTATVKPAAEGFVIRHRA AQAHVLVLTPRSAELHEKLPPKKAADTSKMVLSPMPGLVVSIDVATGQEVKTGEVVAVLEAMKMQNIIRAERDGVVKAVG AKPGDSVAADEVLVEFA >Mature_657_residues MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSMAVEMADEAVFIGPPPAAQSYLLQDKIVEAVRQTGAEAVHP GFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESKKFAAKAGVSTVPGHVGEIDDTGHAIRISEEIGYPVMIKAS AGGGGKGIRVAWSRQDVEEGFPAVRAEAKASFGDDRIFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQKVVE EAPSPLLDEKTRKAMGDQAVALAKAVGYDSAGTVEFVAGQDRSFFFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGET LPFAQDDLKIDGWAMESRIYAEDPYRGFLPSIGRLVRYDPPTEGPVKEGIVRNDAGVREGDEISMFYDPMISKLSTWGKT RDAAIDAMGRALEDFHIEGLGHNIPFLAAVMDQDRFRSGKLSTNYIKDEFPDGFHGLEPTEAQRDLMGAVAVAMHRTLVA RQAPALARDEWIEVVGHEKRPVRVRSESEALVVERPGRDTRLTDIDWRPGRPLFRGKVDGEPFTATVKPAAEGFVIRHRA AQAHVLVLTPRSAELHEKLPPKKAADTSKMVLSPMPGLVVSIDVATGQEVKTGEVVAVLEAMKMQNIIRAERDGVVKAVG AKPGDSVAADEVLVEFA
Specific function: Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotin carboxylation domain [H]
Homologues:
Organism=Homo sapiens, GI65506442, Length=670, Percent_Identity=51.044776119403, Blast_Score=640, Evalue=0.0, Organism=Homo sapiens, GI189095269, Length=670, Percent_Identity=51.044776119403, Blast_Score=639, Evalue=0.0, Organism=Homo sapiens, GI295821183, Length=668, Percent_Identity=49.1017964071856, Blast_Score=593, Evalue=1e-169, Organism=Homo sapiens, GI116805327, Length=674, Percent_Identity=40.0593471810089, Blast_Score=489, Evalue=1e-138, Organism=Homo sapiens, GI106049528, Length=477, Percent_Identity=43.8155136268344, Blast_Score=374, Evalue=1e-103, Organism=Homo sapiens, GI106049295, Length=477, Percent_Identity=43.8155136268344, Blast_Score=374, Evalue=1e-103, Organism=Homo sapiens, GI106049292, Length=477, Percent_Identity=43.8155136268344, Blast_Score=374, Evalue=1e-103, Organism=Homo sapiens, GI38679971, Length=745, Percent_Identity=29.3959731543624, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI38679974, Length=543, Percent_Identity=32.5966850828729, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI38679960, Length=543, Percent_Identity=32.5966850828729, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI38679977, Length=543, Percent_Identity=32.5966850828729, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI38679967, Length=543, Percent_Identity=32.5966850828729, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI134142062, Length=727, Percent_Identity=28.748280605227, Blast_Score=240, Evalue=2e-63, Organism=Escherichia coli, GI1789654, Length=452, Percent_Identity=45.575221238938, Blast_Score=385, Evalue=1e-108, Organism=Caenorhabditis elegans, GI17567343, Length=680, Percent_Identity=49.1176470588235, Blast_Score=610, Evalue=1e-175, Organism=Caenorhabditis elegans, GI71987519, Length=666, Percent_Identity=42.7927927927928, Blast_Score=487, Evalue=1e-138, Organism=Caenorhabditis elegans, GI17562816, Length=480, Percent_Identity=43.125, Blast_Score=362, Evalue=1e-100, Organism=Caenorhabditis elegans, GI133931226, Length=688, Percent_Identity=28.343023255814, Blast_Score=226, Evalue=3e-59, Organism=Caenorhabditis elegans, GI71997163, Length=512, Percent_Identity=30.46875, Blast_Score=224, Evalue=2e-58, Organism=Caenorhabditis elegans, GI71997168, Length=512, Percent_Identity=30.46875, Blast_Score=223, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6319685, Length=470, Percent_Identity=44.2553191489362, Blast_Score=390, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6319695, Length=477, Percent_Identity=40.8805031446541, Blast_Score=342, Evalue=8e-95, Organism=Saccharomyces cerevisiae, GI6321376, Length=477, Percent_Identity=41.0901467505241, Blast_Score=331, Evalue=2e-91, Organism=Saccharomyces cerevisiae, GI6323863, Length=683, Percent_Identity=28.4040995607613, Blast_Score=236, Evalue=1e-62, Organism=Saccharomyces cerevisiae, GI6324343, Length=732, Percent_Identity=27.3224043715847, Blast_Score=234, Evalue=3e-62, Organism=Drosophila melanogaster, GI24651757, Length=674, Percent_Identity=38.2789317507418, Blast_Score=460, Evalue=1e-129, Organism=Drosophila melanogaster, GI24651759, Length=636, Percent_Identity=37.1069182389937, Blast_Score=414, Evalue=1e-116, Organism=Drosophila melanogaster, GI24652212, Length=520, Percent_Identity=43.0769230769231, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652210, Length=520, Percent_Identity=43.0769230769231, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652214, Length=520, Percent_Identity=43.0769230769231, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI19921944, Length=520, Percent_Identity=43.0769230769231, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652216, Length=520, Percent_Identity=43.0769230769231, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI281363050, Length=528, Percent_Identity=42.0454545454545, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652224, Length=528, Percent_Identity=42.0454545454545, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652222, Length=528, Percent_Identity=42.0454545454545, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652220, Length=528, Percent_Identity=42.0454545454545, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24652218, Length=528, Percent_Identity=42.0454545454545, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI161076407, Length=503, Percent_Identity=32.20675944334, Blast_Score=232, Evalue=6e-61, Organism=Drosophila melanogaster, GI24586460, Length=503, Percent_Identity=32.20675944334, Blast_Score=232, Evalue=6e-61, Organism=Drosophila melanogaster, GI161076409, Length=503, Percent_Identity=32.20675944334, Blast_Score=232, Evalue=7e-61, Organism=Drosophila melanogaster, GI24586458, Length=503, Percent_Identity=32.20675944334, Blast_Score=232, Evalue=8e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004549 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.4.1.1 [H]
Molecular weight: Translated: 71754; Mature: 71754
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSMAVEMADEAVFIGPPPAAQSY CCCEEEEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHEEEECCCEEEECCCCCHHHH LLQDKIVEAVRQTGAEAVHPGFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESK HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHH KFAAKAGVSTVPGHVGEIDDTGHAIRISEEIGYPVMIKASAGGGGKGIRVAWSRQDVEEG HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCCCHHHC FPAVRAEAKASFGDDRIFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQKVVE CCHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHH EAPSPLLDEKTRKAMGDQAVALAKAVGYDSAGTVEFVAGQDRSFFFLEMNTRLQVEHPVT HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCEEEECCCHH ELITGVDLVEQMIRVAAGETLPFAQDDLKIDGWAMESRIYAEDPYRGFLPSIGRLVRYDP HHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCEEECCEEEECCCCCCHHHHHCCEEECCC PTEGPVKEGIVRNDAGVREGDEISMFYDPMISKLSTWGKTRDAAIDAMGRALEDFHIEGL CCCCCHHHCCEECCCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCC GHNIPFLAAVMDQDRFRSGKLSTNYIKDEFPDGFHGLEPTEAQRDLMGAVAVAMHRTLVA CCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RQAPALARDEWIEVVGHEKRPVRVRSESEALVVERPGRDTRLTDIDWRPGRPLFRGKVDG HCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCEEEECCCCCCCCCEECCCCC EPFTATVKPAAEGFVIRHRAAQAHVLVLTPRSAELHEKLPPKKAADTSKMVLSPMPGLVV CCEEEEECCCCCCEEEEEECCCEEEEEECCCCHHHHHCCCCCCCCCCCCEEECCCCCEEE SIDVATGQEVKTGEVVAVLEAMKMQNIIRAERDGVVKAVGAKPGDSVAADEVLVEFA EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHEEEECC >Mature Secondary Structure MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSMAVEMADEAVFIGPPPAAQSY CCCEEEEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHEEEECCCEEEECCCCCHHHH LLQDKIVEAVRQTGAEAVHPGFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESK HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHH KFAAKAGVSTVPGHVGEIDDTGHAIRISEEIGYPVMIKASAGGGGKGIRVAWSRQDVEEG HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCCCHHHC FPAVRAEAKASFGDDRIFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQKVVE CCHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHH EAPSPLLDEKTRKAMGDQAVALAKAVGYDSAGTVEFVAGQDRSFFFLEMNTRLQVEHPVT HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCEEEECCCHH ELITGVDLVEQMIRVAAGETLPFAQDDLKIDGWAMESRIYAEDPYRGFLPSIGRLVRYDP HHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCEEECCEEEECCCCCCHHHHHCCEEECCC PTEGPVKEGIVRNDAGVREGDEISMFYDPMISKLSTWGKTRDAAIDAMGRALEDFHIEGL CCCCCHHHCCEECCCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCC GHNIPFLAAVMDQDRFRSGKLSTNYIKDEFPDGFHGLEPTEAQRDLMGAVAVAMHRTLVA CCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RQAPALARDEWIEVVGHEKRPVRVRSESEALVVERPGRDTRLTDIDWRPGRPLFRGKVDG HCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCEEEECCCCCCCCCEECCCCC EPFTATVKPAAEGFVIRHRAAQAHVLVLTPRSAELHEKLPPKKAADTSKMVLSPMPGLVV CCEEEEECCCCCCEEEEEECCCEEEEEECCCCHHHHHCCCCCCCCCCCCEEECCCCCEEE SIDVATGQEVKTGEVVAVLEAMKMQNIIRAERDGVVKAVGAKPGDSVAADEVLVEFA EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 11195096 [H]