| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fpvA [H]
Identifier: 197104503
GI number: 197104503
Start: 1160471
End: 1162984
Strand: Reverse
Name: fpvA [H]
Synonym: PHZ_c1037
Alternate gene names: 197104503
Gene position: 1162984-1160471 (Counterclockwise)
Preceding gene: 197104507
Following gene: 197104498
Centisome position: 29.1
GC content: 66.79
Gene sequence:
>2514_bases ATGATTTCCAGAAAGACTCTAATGCTGTCTTGCGCCCTGATGGCGCTGGGCGGCGGCGCGGCGCAGGCTCAGACCGTCAT CGAAGAGCTCGTGGTCACCGCCGAAAAGCGCGAGCAGTCCCTGCAGGACGTGCCCGTCGCGGTCTCCGCCTTCACCGACG AGCGCCGCGAGATGGTCGGCATCAACTCGGTGCAGGACCTGACCAACTTCACGCCGGGCCTGGCCTATTCGACCAACAAC GACCGCATCAACATGCGGGGCATCGGCCGCTTCACGAACAACCGCTCCTCCGAGGGCGGCGTGGCCATGTACAACGACGG CGTCTACACCTCGTCGGTGACGGCCTTCGCGCGCTCGACGCTGTTCATCGACCGCACCGAGGCCCTGCGCGGGCCCCAGG GCACCCTCTACGGCCGCAACTCGATCGGCGGCGCGCTGAACATCATCTCCAAGCGGCCCACCGACGACTTCTACGCCGAA GTGCGCGCCGGTATGGGCAACTACGACACCTGGATGACCGAGGCGGCGATCTCGGGCCCGCTGGTGGGGAACATCCGCGG CCGCCTCGCCGGCTCCTACAACTCGCAGGGCGAGGGGTACTTCACGAACCTCAATCCGAACGGCAAGTCCGAGGGCGGCC GCGGCGACCAGTGGCAGGTCGAGGGCCAGCTCGACGGCGAGCTGGGCGACGGCAAGCTCGAGTGGTGGCTGAAGGTCGAC AGCGCCGAGTGGCACAACCTGGGCCGCGGCCCGGGCGGGCGCACCACCATCACCTACGGCCTGCGCGACGTCACCTCGCC GCTTCAGGCGGCCCTGACGCCCAACTCCGCCGCGCTGGGCCTGCCGCTGGGCCTGCCGGGCAACCAGTGCCAGTTCTGCT TCGACACCGACGACGGCAACTACATCAGCCTCGAGAACAACGGCTACGCGTTCAACGCCACGCTGCACCTCGACAGCTTC GATGTGAAGTACATCGCCGGCTACACCTACTACGACTACCGGCTGCAGACCGACCTCGACGCCACCTCGCGCCAGGCGCC CTTCCAGCTGCCGGTCAGCACCCAGCCCTACTATCCGCGGCGCAACAACCAGTACCAGGAAGAGGTCTGGTGGTTCTCGA ACGAGATCAACATCGCCTCGACCTACGACAGCCCGCTCCAGTGGCTGATCGGCGCCTACCAGTTCCGCGAAGGGTCCAAC TACACCCTCTCGGACGCCCGCCATCCGGACGATGCGCGGTTCGAGAACCCCACCCTGTTCTCGCTTAATCCGGCGACCCA GCTCATTCCGGCCGCCCCGAACCCCGAGCGGCGCTACGCCTACGGCAGCTCCGAGAACCGCAGCGAGTCCTACGCGGTCT TCGGCCAGGCCGACTGGCAGTTCACCGACGAGCTGAAGTTCACCGCCGGCTTGCGCTACACCTATGACCGCAAGCGCTCG TTCGAGAGCGCGCGGCTGTTCTGCCTCTACACGGCCACCTGCCCGATCTCGCGGGTCACGGGCCGTCCGGTGGACGTGAC GGCAGTGGCCGCGCCGGGGACCAGCACCGATCCGGCCGTCTACCTGCCCGCCTTCACCGATCCCACGACGGGCCTGCGCC ACCGCGGCCTGAAGTACGACTGGAGCGGCATCACCGGCACCCTGGGCGTCGACTGGCAGCCCGATCCGGACACCCTGGCC TATGCGAAGTACACCCGCGGCTACAAGGCGGGCGGCTTCAACTCGGGCACCACGACCCTGACGCCGAACGTCACGACCCA GGAAGAGACCATCGACGCCTACGAGGTCGGCCTGAAGAAGACCTTCGGCGGGACCTTCCAGGCCAACGCCTCGGCCTTCC TCTACGACTACCAGGACATCCAGGTGCCGATCACGGGCCGCGACCCGGTGACCGACCTGAACGTCACCCGCTTCTTCAAC ATGCCGAAGGCGCGGATCGTCGGCTTCGAGCTGGAGACCATCTGGCAGCCGATCGACAACCTGCAGATCCTGGCCAACTA CTCCTACCTGAACGCCGAGCTGAAGGAGGCCTGCTGCTTCCAGGATCCGGAGGACCCGCGCGGCCTGCAGCCGGGCGTGG TGCTGGCCGGCAACACCGCCGCGGCGCTCGCCAGCCCGACGGCGGGCCTCAACCAGGACCTCGACGGGGCCAAGCTGCCC TCGTCCACGCCGCACCGCGTGACGTTCAACGTCAACTACACCTGGGAATTCGACGTCGGCGAGCTGTCGGCCTCGCTGAC CCACGTGTGGAAGGACAAGACCTACTATTCGATCTTCAACCGCTACTACAACGAAGGGAAGGCGTGGCATCAGACCGACG CGCGCCTGCTCTGGAACGACATCGACGACCGCTACACGCTGATCGCCTACGTGAAGAACATCTTCGAGCAGGAAGGCGTC GCCGGCGCCGACGGCTCGCGGATCAACACCGGTCCGAACACCGGCTTCATCAACCGCACCATCTCGTACGTGCCCCCGCG CACCTACGGCGTGGAGCTGCAGTACCGGTTCTAG
Upstream 100 bases:
>100_bases GTACGGCAAAGCCTTGTTGACGCCGCCGATTCCATCCCCGATCTTCGAAACCAAGCGCCACAAAGGTGCGATCGAAGAAC CGGCTTGGGGGAACGTCCTG
Downstream 100 bases:
>100_bases GCCCCGGCTTCGGCCAGGAGAGCAACGACCGCCCCGGCCCCACGGCCGGGGCGTTTTCGTCTGTCCCCCCACCCCCCTCC CCCCTCGGGGGAGGGGGACC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF
Sequences:
>Translated_837_residues MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF >Mature_837_residues MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=181, Percent_Identity=27.0718232044199, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1786344, Length=156, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 92913; Mature: 92913
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVG CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC INSVQDLTNFTPGLAYSTNNDRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARST CCCHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEHHHHHHHHEE LFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAEVRAGMGNYDTWMTEAAISGP EEEEHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCC LVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD EEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEC SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGN CCHHHCCCCCCCCCEEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCC YISLENNGYAFNATLHLDSFDVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPR EEEECCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCC RNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSNYTLSDARHPDDARFENPTLF CCCCCHHHHEEEECCEEEEECCCCHHHHHHHHHEECCCCCCEECCCCCCCCCCCCCCEEE SLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS EECCHHHEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCEEEEECCEEEEHHHCC FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYD CCCEEEEEEEEECCCCHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCCEEE WSGITGTLGVDWQPDPDTLAYAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKK CCCCEEEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHH TFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFNMPKARIVGFELETIWQPIDN HCCCEEECCCEEEEEEECEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEHHHHHCCCCC LQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP EEEEEECHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCC SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWND CCCCCEEEEEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCEEEECC IDDRYTLIAYVKNIFEQEGVAGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF CCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEECEEEECCCCEEEEEEEEEC >Mature Secondary Structure MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVG CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC INSVQDLTNFTPGLAYSTNNDRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARST CCCHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEHHHHHHHHEE LFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAEVRAGMGNYDTWMTEAAISGP EEEEHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCC LVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD EEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEC SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGN CCHHHCCCCCCCCCEEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCC YISLENNGYAFNATLHLDSFDVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPR EEEECCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCC RNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSNYTLSDARHPDDARFENPTLF CCCCCHHHHEEEECCEEEEECCCCHHHHHHHHHEECCCCCCEECCCCCCCCCCCCCCEEE SLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS EECCHHHEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCEEEEECCEEEEHHHCC FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYD CCCEEEEEEEEECCCCHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCCEEE WSGITGTLGVDWQPDPDTLAYAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKK CCCCEEEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHH TFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFNMPKARIVGFELETIWQPIDN HCCCEEECCCEEEEEEECEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEHHHHHCCCCC LQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP EEEEEECHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCC SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWND CCCCCEEEEEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCEEEECC IDDRYTLIAYVKNIFEQEGVAGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF CCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEECEEEECCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]