Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

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The map label for this gene is fpvA [H]

Identifier: 197104503

GI number: 197104503

Start: 1160471

End: 1162984

Strand: Reverse

Name: fpvA [H]

Synonym: PHZ_c1037

Alternate gene names: 197104503

Gene position: 1162984-1160471 (Counterclockwise)

Preceding gene: 197104507

Following gene: 197104498

Centisome position: 29.1

GC content: 66.79

Gene sequence:

>2514_bases
ATGATTTCCAGAAAGACTCTAATGCTGTCTTGCGCCCTGATGGCGCTGGGCGGCGGCGCGGCGCAGGCTCAGACCGTCAT
CGAAGAGCTCGTGGTCACCGCCGAAAAGCGCGAGCAGTCCCTGCAGGACGTGCCCGTCGCGGTCTCCGCCTTCACCGACG
AGCGCCGCGAGATGGTCGGCATCAACTCGGTGCAGGACCTGACCAACTTCACGCCGGGCCTGGCCTATTCGACCAACAAC
GACCGCATCAACATGCGGGGCATCGGCCGCTTCACGAACAACCGCTCCTCCGAGGGCGGCGTGGCCATGTACAACGACGG
CGTCTACACCTCGTCGGTGACGGCCTTCGCGCGCTCGACGCTGTTCATCGACCGCACCGAGGCCCTGCGCGGGCCCCAGG
GCACCCTCTACGGCCGCAACTCGATCGGCGGCGCGCTGAACATCATCTCCAAGCGGCCCACCGACGACTTCTACGCCGAA
GTGCGCGCCGGTATGGGCAACTACGACACCTGGATGACCGAGGCGGCGATCTCGGGCCCGCTGGTGGGGAACATCCGCGG
CCGCCTCGCCGGCTCCTACAACTCGCAGGGCGAGGGGTACTTCACGAACCTCAATCCGAACGGCAAGTCCGAGGGCGGCC
GCGGCGACCAGTGGCAGGTCGAGGGCCAGCTCGACGGCGAGCTGGGCGACGGCAAGCTCGAGTGGTGGCTGAAGGTCGAC
AGCGCCGAGTGGCACAACCTGGGCCGCGGCCCGGGCGGGCGCACCACCATCACCTACGGCCTGCGCGACGTCACCTCGCC
GCTTCAGGCGGCCCTGACGCCCAACTCCGCCGCGCTGGGCCTGCCGCTGGGCCTGCCGGGCAACCAGTGCCAGTTCTGCT
TCGACACCGACGACGGCAACTACATCAGCCTCGAGAACAACGGCTACGCGTTCAACGCCACGCTGCACCTCGACAGCTTC
GATGTGAAGTACATCGCCGGCTACACCTACTACGACTACCGGCTGCAGACCGACCTCGACGCCACCTCGCGCCAGGCGCC
CTTCCAGCTGCCGGTCAGCACCCAGCCCTACTATCCGCGGCGCAACAACCAGTACCAGGAAGAGGTCTGGTGGTTCTCGA
ACGAGATCAACATCGCCTCGACCTACGACAGCCCGCTCCAGTGGCTGATCGGCGCCTACCAGTTCCGCGAAGGGTCCAAC
TACACCCTCTCGGACGCCCGCCATCCGGACGATGCGCGGTTCGAGAACCCCACCCTGTTCTCGCTTAATCCGGCGACCCA
GCTCATTCCGGCCGCCCCGAACCCCGAGCGGCGCTACGCCTACGGCAGCTCCGAGAACCGCAGCGAGTCCTACGCGGTCT
TCGGCCAGGCCGACTGGCAGTTCACCGACGAGCTGAAGTTCACCGCCGGCTTGCGCTACACCTATGACCGCAAGCGCTCG
TTCGAGAGCGCGCGGCTGTTCTGCCTCTACACGGCCACCTGCCCGATCTCGCGGGTCACGGGCCGTCCGGTGGACGTGAC
GGCAGTGGCCGCGCCGGGGACCAGCACCGATCCGGCCGTCTACCTGCCCGCCTTCACCGATCCCACGACGGGCCTGCGCC
ACCGCGGCCTGAAGTACGACTGGAGCGGCATCACCGGCACCCTGGGCGTCGACTGGCAGCCCGATCCGGACACCCTGGCC
TATGCGAAGTACACCCGCGGCTACAAGGCGGGCGGCTTCAACTCGGGCACCACGACCCTGACGCCGAACGTCACGACCCA
GGAAGAGACCATCGACGCCTACGAGGTCGGCCTGAAGAAGACCTTCGGCGGGACCTTCCAGGCCAACGCCTCGGCCTTCC
TCTACGACTACCAGGACATCCAGGTGCCGATCACGGGCCGCGACCCGGTGACCGACCTGAACGTCACCCGCTTCTTCAAC
ATGCCGAAGGCGCGGATCGTCGGCTTCGAGCTGGAGACCATCTGGCAGCCGATCGACAACCTGCAGATCCTGGCCAACTA
CTCCTACCTGAACGCCGAGCTGAAGGAGGCCTGCTGCTTCCAGGATCCGGAGGACCCGCGCGGCCTGCAGCCGGGCGTGG
TGCTGGCCGGCAACACCGCCGCGGCGCTCGCCAGCCCGACGGCGGGCCTCAACCAGGACCTCGACGGGGCCAAGCTGCCC
TCGTCCACGCCGCACCGCGTGACGTTCAACGTCAACTACACCTGGGAATTCGACGTCGGCGAGCTGTCGGCCTCGCTGAC
CCACGTGTGGAAGGACAAGACCTACTATTCGATCTTCAACCGCTACTACAACGAAGGGAAGGCGTGGCATCAGACCGACG
CGCGCCTGCTCTGGAACGACATCGACGACCGCTACACGCTGATCGCCTACGTGAAGAACATCTTCGAGCAGGAAGGCGTC
GCCGGCGCCGACGGCTCGCGGATCAACACCGGTCCGAACACCGGCTTCATCAACCGCACCATCTCGTACGTGCCCCCGCG
CACCTACGGCGTGGAGCTGCAGTACCGGTTCTAG

Upstream 100 bases:

>100_bases
GTACGGCAAAGCCTTGTTGACGCCGCCGATTCCATCCCCGATCTTCGAAACCAAGCGCCACAAAGGTGCGATCGAAGAAC
CGGCTTGGGGGAACGTCCTG

Downstream 100 bases:

>100_bases
GCCCCGGCTTCGGCCAGGAGAGCAACGACCGCCCCGGCCCCACGGCCGGGGCGTTTTCGTCTGTCCCCCCACCCCCCTCC
CCCCTCGGGGGAGGGGGACC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 837

Protein sequence:

>837_residues
MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN
DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE
VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD
SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF
DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN
YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS
FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA
YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN
MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP
SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV
AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF

Sequences:

>Translated_837_residues
MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN
DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE
VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD
SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF
DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN
YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS
FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA
YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN
MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP
SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV
AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF
>Mature_837_residues
MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVGINSVQDLTNFTPGLAYSTNN
DRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARSTLFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAE
VRAGMGNYDTWMTEAAISGPLVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD
SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGNYISLENNGYAFNATLHLDSF
DVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPRRNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSN
YTLSDARHPDDARFENPTLFSLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS
FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYDWSGITGTLGVDWQPDPDTLA
YAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKKTFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFN
MPKARIVGFELETIWQPIDNLQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP
SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWNDIDDRYTLIAYVKNIFEQEGV
AGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF

Specific function: Receptor for the siderophore ferripyoverdine [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=181, Percent_Identity=27.0718232044199, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1786344, Length=156, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 92913; Mature: 92913

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC
INSVQDLTNFTPGLAYSTNNDRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARST
CCCHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEHHHHHHHHEE
LFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAEVRAGMGNYDTWMTEAAISGP
EEEEHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCC
LVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD
EEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEC
SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGN
CCHHHCCCCCCCCCEEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCC
YISLENNGYAFNATLHLDSFDVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPR
EEEECCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCC
RNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSNYTLSDARHPDDARFENPTLF
CCCCCHHHHEEEECCEEEEECCCCHHHHHHHHHEECCCCCCEECCCCCCCCCCCCCCEEE
SLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS
EECCHHHEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCEEEEECCEEEEHHHCC
FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYD
CCCEEEEEEEEECCCCHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCCEEE
WSGITGTLGVDWQPDPDTLAYAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKK
CCCCEEEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHH
TFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFNMPKARIVGFELETIWQPIDN
HCCCEEECCCEEEEEEECEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEHHHHHCCCCC
LQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP
EEEEEECHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCC
SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWND
CCCCCEEEEEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCEEEECC
IDDRYTLIAYVKNIFEQEGVAGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF
CCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEECEEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MISRKTLMLSCALMALGGGAAQAQTVIEELVVTAEKREQSLQDVPVAVSAFTDERREMVG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC
INSVQDLTNFTPGLAYSTNNDRINMRGIGRFTNNRSSEGGVAMYNDGVYTSSVTAFARST
CCCHHHHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEHHHHHHHHEE
LFIDRTEALRGPQGTLYGRNSIGGALNIISKRPTDDFYAEVRAGMGNYDTWMTEAAISGP
EEEEHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCC
LVGNIRGRLAGSYNSQGEGYFTNLNPNGKSEGGRGDQWQVEGQLDGELGDGKLEWWLKVD
EEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEC
SAEWHNLGRGPGGRTTITYGLRDVTSPLQAALTPNSAALGLPLGLPGNQCQFCFDTDDGN
CCHHHCCCCCCCCCEEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCC
YISLENNGYAFNATLHLDSFDVKYIAGYTYYDYRLQTDLDATSRQAPFQLPVSTQPYYPR
EEEECCCCEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCC
RNNQYQEEVWWFSNEINIASTYDSPLQWLIGAYQFREGSNYTLSDARHPDDARFENPTLF
CCCCCHHHHEEEECCEEEEECCCCHHHHHHHHHEECCCCCCEECCCCCCCCCCCCCCEEE
SLNPATQLIPAAPNPERRYAYGSSENRSESYAVFGQADWQFTDELKFTAGLRYTYDRKRS
EECCHHHEEECCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCEEEEECCEEEEHHHCC
FESARLFCLYTATCPISRVTGRPVDVTAVAAPGTSTDPAVYLPAFTDPTTGLRHRGLKYD
CCCEEEEEEEEECCCCHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHCCCEEE
WSGITGTLGVDWQPDPDTLAYAKYTRGYKAGGFNSGTTTLTPNVTTQEETIDAYEVGLKK
CCCCEEEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHH
TFGGTFQANASAFLYDYQDIQVPITGRDPVTDLNVTRFFNMPKARIVGFELETIWQPIDN
HCCCEEECCCEEEEEEECEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEHHHHHCCCCC
LQILANYSYLNAELKEACCFQDPEDPRGLQPGVVLAGNTAAALASPTAGLNQDLDGAKLP
EEEEEECHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCC
SSTPHRVTFNVNYTWEFDVGELSASLTHVWKDKTYYSIFNRYYNEGKAWHQTDARLLWND
CCCCCEEEEEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCEEEECC
IDDRYTLIAYVKNIFEQEGVAGADGSRINTGPNTGFINRTISYVPPRTYGVELQYRF
CCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEECEEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8335619; 8918232; 10984043 [H]