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The map label for this gene is ycjD [H]

Identifier: 197104498

GI number: 197104498

Start: 1150933

End: 1151325

Strand: Reverse

Name: ycjD [H]

Synonym: PHZ_c1032

Alternate gene names: 197104498

Gene position: 1151325-1150933 (Counterclockwise)

Preceding gene: 197104503

Following gene: 197104497

Centisome position: 28.81

GC content: 76.34

Gene sequence:

>393_bases
ATGTACGCACCGAAGGCGACCGTGGGCCGGGCGCGCGCCCTGCGGCGGCGGATGACCCCGCCCGAGGTCCGGCTGTGGCG
CGTCCTGCGCGGCAAGGCCCTCGACGGCCTCCGCTTCCGCCGCCAACACCCGATCGGTTCCTACGTGCTCGACTTCTACT
GCGAGGCCGCCGCCCTCTGCGTCGAGGTCGACGGCCAGCGCCACTGGCTCGGCCGCGCCCAGGAACGCGACGCCGAGCGC
GACGCCTGGCTCGCCGCCCGCGGGATCCGCACCCTGCGCCTCTCGGCCAGCCTCGTCCTGGAGGACATGGACGCCGCCCT
GCGCGCCATCGCCGCCGAAGCCCGTCGACGCCCGCCCCCCTCCTCCCCCATCGGGGGAGGGGGACCGCGATAG

Upstream 100 bases:

>100_bases
GGGCCGGCCCCACGCTCCGAGCCCCCGGCAAGCCCCCACCACCATGCTGCGCATGGTCCCCCTCCCCCGTCGGGGGAGGA
GGGTGATAGCCTGCCCCTCC

Downstream 100 bases:

>100_bases
CGGTGGAGGGGGCCGGCCCCATCCGCCGAGCTAGGTGGCGAGCCCCCACCACCATGCTGCGCATGCTCCCCCACCCCGAT
GGGGGAGGAGGTGCGTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MYAPKATVGRARALRRRMTPPEVRLWRVLRGKALDGLRFRRQHPIGSYVLDFYCEAAALCVEVDGQRHWLGRAQERDAER
DAWLAARGIRTLRLSASLVLEDMDAALRAIAAEARRRPPPSSPIGGGGPR

Sequences:

>Translated_130_residues
MYAPKATVGRARALRRRMTPPEVRLWRVLRGKALDGLRFRRQHPIGSYVLDFYCEAAALCVEVDGQRHWLGRAQERDAER
DAWLAARGIRTLRLSASLVLEDMDAALRAIAAEARRRPPPSSPIGGGGPR
>Mature_130_residues
MYAPKATVGRARALRRRMTPPEVRLWRVLRGKALDGLRFRRQHPIGSYVLDFYCEAAALCVEVDGQRHWLGRAQERDAER
DAWLAARGIRTLRLSASLVLEDMDAALRAIAAEARRRPPPSSPIGGGGPR

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=41.0714285714286, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14570; Mature: 14570

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAPKATVGRARALRRRMTPPEVRLWRVLRGKALDGLRFRRQHPIGSYVLDFYCEAAALC
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
VEVDGQRHWLGRAQERDAERDAWLAARGIRTLRLSASLVLEDMDAALRAIAAEARRRPPP
EEECCCHHHHCCCHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SSPIGGGGPR
CCCCCCCCCC
>Mature Secondary Structure
MYAPKATVGRARALRRRMTPPEVRLWRVLRGKALDGLRFRRQHPIGSYVLDFYCEAAALC
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
VEVDGQRHWLGRAQERDAERDAWLAARGIRTLRLSASLVLEDMDAALRAIAAEARRRPPP
EEECCCHHHHCCCHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SSPIGGGGPR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]