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The map label for this gene is ydiF [H]

Identifier: 197104475

GI number: 197104475

Start: 1119229

End: 1120872

Strand: Reverse

Name: ydiF [H]

Synonym: PHZ_c1009

Alternate gene names: 197104475

Gene position: 1120872-1119229 (Counterclockwise)

Preceding gene: 197104476

Following gene: 197104471

Centisome position: 28.05

GC content: 68.92

Gene sequence:

>1644_bases
ATGATCCGCCTCGACAACATCTCCAAGCAGAACGGCCACCAGATCCTGTTCATCGAAGCCTCGATGAGCATCCAGAAGGG
CGAGAAGGTCGGGCTGGTCGGCCCCAACGGCGCCGGCAAGACCACCCTGTTCCGCATGATCACCGGCCAGGAGCAGCCCG
ACGACGGCGTGGTCGCCATCGATCCCGGCCTGACCATCGGCTACTTCAGCCAGGACGTCGGCGAGATGTCGGGCCAGAGC
GCCGTCGCCGCGGTGATGGACGGCGTGGGGCCCGTCAGCGCCCTGGCCGCCGAGATGGCCAGGCTCGAGGCGGCGATGGT
CGATCCGGCCATGATGGAGCCGGGCCGGGCGGACGAGCTGGACGCCGTCATCCAGCGCTACGGCGAGGTGCAGGGCCGCT
TCGAGGAGCTGGACGGCTATGCGCTGGAGGCCCGCGCCCGCGAGGTGCTGGCCGGCCTCAGCTTCAGCCAGGAGCGCATG
GACGGCGACGTCGGCCTCCTGTCCGGCGGCTGGAAGATGCGGGTGGCCCTGGCCCGCATCCTCCTGATGCGGCCCGACGG
CATGCTGCTGGACGAGCCCAGCAACCACCTCGACCTGGAAAGCCTGATCTGGCTCGAGTCCTTCCTCAAGGGCTACGACG
GCGCGCTGCTGATGACCTCGCACGACCGCGCCTTCATGAACCGCATCGTCGGCAAGGTGGTGGAGATCGACGCCGGCCAG
CTCATCACCTACTCGGGCGACCTCGACTTCTACGACCAGCAGCGCGCGCTCGGCGAACAGCAGCGCCAGGCGCAGTACGA
GCGCCAGCAGGCCATGCTGGCCAAGGAGATCAAGTTCATCGAGCGGTTCAAGGCGCGCGCCAGCCACGCCGCCCAGGTCC
AGAGCCGGGTGAAGAAGCTCGACAAGATCGAGCGCGTCGAGCCGCCGCGCCGGCGCCAGCAGGTCCAGTTCGAGTTCCGG
AGCCCGCCGCGCTCGGGCGACGACGTGATCAGCCTCAAGGGCGTCCACAAGGGCTACGGCGACCGGCCGATCTACGAGGG
CCTGGATTTCCTGGTCCGTCGTAAGGAACGCTGGTGCGTCCTGGGGGCCAACGGCGCCGGCAAGTCCACCCTGCTGAAGC
TGGCCGCCGGCGCCGTCGCGCCCGACAAGGGGACCGTCAGCATCGGCGCCAGCGTGAAGATGGGCTACTTCGCCCAGCAT
TCCATGGACCTGCTGGACGGCGAGGAGACGATCTTCGAATCCCTCGACGGCGCCTTCCCCCATGCCGGCCAGGGCGCGCT
GCGCACCCTCGCCGGATGCTTCGGCTTCTCGGGGGACGATGTCGAAAAGCCCTGCCGCGTCCTCTCCGGCGGCGAGAAGG
CCCGCCTGATCATGGCCCGGATGCTGTTCGACCCACCGAACCTGCTGGTGCTCGACGAGCCGACCAACCACCTCGACATG
GCGACCAAGGAGATGCTGGTCCAGGCCCTGGCGGACTTCGAGGGGACCATGCTCTTCGTCAGCCACGACCGCCACTTCCT
GGCGGCCCTGTCCAACCGCGTGCTGGAGCTGACGCCCGAGGGCGTCCATCAGTACGGCGGCGGCTACACCGAATATGTCG
CCCGCACGGGCCAGGAAGCCCCGGGGCTGCACCCGGGCGGCTAG

Upstream 100 bases:

>100_bases
CGGCAGCCCGACGATCGGCGCCTATCAAGAAGGCCCTGTGACGAGACGCCTCCCCGCCCCGGCTGGCGTTCGCCTCGCCG
CCGGGCTAGCAGACCGCCCG

Downstream 100 bases:

>100_bases
GGCCGCCCGGCGCCGGGCTGCGCGACGGTCCGGCGAAAGCGGCGCGGCGGCGCGCCGTACTCGGCCGCGAAGGCGGACAC
GAAGTTGCTGGCGTGGGCGT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MIRLDNISKQNGHQILFIEASMSIQKGEKVGLVGPNGAGKTTLFRMITGQEQPDDGVVAIDPGLTIGYFSQDVGEMSGQS
AVAAVMDGVGPVSALAAEMARLEAAMVDPAMMEPGRADELDAVIQRYGEVQGRFEELDGYALEARAREVLAGLSFSQERM
DGDVGLLSGGWKMRVALARILLMRPDGMLLDEPSNHLDLESLIWLESFLKGYDGALLMTSHDRAFMNRIVGKVVEIDAGQ
LITYSGDLDFYDQQRALGEQQRQAQYERQQAMLAKEIKFIERFKARASHAAQVQSRVKKLDKIERVEPPRRRQQVQFEFR
SPPRSGDDVISLKGVHKGYGDRPIYEGLDFLVRRKERWCVLGANGAGKSTLLKLAAGAVAPDKGTVSIGASVKMGYFAQH
SMDLLDGEETIFESLDGAFPHAGQGALRTLAGCFGFSGDDVEKPCRVLSGGEKARLIMARMLFDPPNLLVLDEPTNHLDM
ATKEMLVQALADFEGTMLFVSHDRHFLAALSNRVLELTPEGVHQYGGGYTEYVARTGQEAPGLHPGG

Sequences:

>Translated_547_residues
MIRLDNISKQNGHQILFIEASMSIQKGEKVGLVGPNGAGKTTLFRMITGQEQPDDGVVAIDPGLTIGYFSQDVGEMSGQS
AVAAVMDGVGPVSALAAEMARLEAAMVDPAMMEPGRADELDAVIQRYGEVQGRFEELDGYALEARAREVLAGLSFSQERM
DGDVGLLSGGWKMRVALARILLMRPDGMLLDEPSNHLDLESLIWLESFLKGYDGALLMTSHDRAFMNRIVGKVVEIDAGQ
LITYSGDLDFYDQQRALGEQQRQAQYERQQAMLAKEIKFIERFKARASHAAQVQSRVKKLDKIERVEPPRRRQQVQFEFR
SPPRSGDDVISLKGVHKGYGDRPIYEGLDFLVRRKERWCVLGANGAGKSTLLKLAAGAVAPDKGTVSIGASVKMGYFAQH
SMDLLDGEETIFESLDGAFPHAGQGALRTLAGCFGFSGDDVEKPCRVLSGGEKARLIMARMLFDPPNLLVLDEPTNHLDM
ATKEMLVQALADFEGTMLFVSHDRHFLAALSNRVLELTPEGVHQYGGGYTEYVARTGQEAPGLHPGG
>Mature_547_residues
MIRLDNISKQNGHQILFIEASMSIQKGEKVGLVGPNGAGKTTLFRMITGQEQPDDGVVAIDPGLTIGYFSQDVGEMSGQS
AVAAVMDGVGPVSALAAEMARLEAAMVDPAMMEPGRADELDAVIQRYGEVQGRFEELDGYALEARAREVLAGLSFSQERM
DGDVGLLSGGWKMRVALARILLMRPDGMLLDEPSNHLDLESLIWLESFLKGYDGALLMTSHDRAFMNRIVGKVVEIDAGQ
LITYSGDLDFYDQQRALGEQQRQAQYERQQAMLAKEIKFIERFKARASHAAQVQSRVKKLDKIERVEPPRRRQQVQFEFR
SPPRSGDDVISLKGVHKGYGDRPIYEGLDFLVRRKERWCVLGANGAGKSTLLKLAAGAVAPDKGTVSIGASVKMGYFAQH
SMDLLDGEETIFESLDGAFPHAGQGALRTLAGCFGFSGDDVEKPCRVLSGGEKARLIMARMLFDPPNLLVLDEPTNHLDM
ATKEMLVQALADFEGTMLFVSHDRHFLAALSNRVLELTPEGVHQYGGGYTEYVARTGQEAPGLHPGG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=542, Percent_Identity=34.5018450184502, Blast_Score=296, Evalue=4e-80,
Organism=Homo sapiens, GI27881506, Length=558, Percent_Identity=31.7204301075269, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI10947137, Length=558, Percent_Identity=31.7204301075269, Blast_Score=246, Evalue=4e-65,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=33.4558823529412, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=33.4558823529412, Blast_Score=236, Evalue=6e-62,
Organism=Escherichia coli, GI1789751, Length=532, Percent_Identity=37.406015037594, Blast_Score=377, Evalue=1e-105,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=35.0553505535055, Blast_Score=346, Evalue=2e-96,
Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=32.7586206896552, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI1787182, Length=540, Percent_Identity=33.8888888888889, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI87081782, Length=544, Percent_Identity=24.2647058823529, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788225, Length=244, Percent_Identity=26.6393442622951, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=250, Percent_Identity=26.4, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786872, Length=263, Percent_Identity=26.2357414448669, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=24.5283018867925, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787164, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=28.3720930232558, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=28.4444444444444, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=201, Percent_Identity=26.865671641791, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=552, Percent_Identity=30.0724637681159, Blast_Score=274, Evalue=9e-74,
Organism=Caenorhabditis elegans, GI17553372, Length=538, Percent_Identity=33.6431226765799, Blast_Score=274, Evalue=1e-73,
Organism=Caenorhabditis elegans, GI17555318, Length=520, Percent_Identity=30.9615384615385, Blast_Score=248, Evalue=8e-66,
Organism=Caenorhabditis elegans, GI71983510, Length=284, Percent_Identity=25.7042253521127, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=284, Percent_Identity=25.7042253521127, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=284, Percent_Identity=25.7042253521127, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=558, Percent_Identity=30.8243727598566, Blast_Score=266, Evalue=5e-72,
Organism=Saccharomyces cerevisiae, GI6320874, Length=539, Percent_Identity=31.5398886827458, Blast_Score=266, Evalue=5e-72,
Organism=Saccharomyces cerevisiae, GI6325030, Length=450, Percent_Identity=27.5555555555556, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=392, Percent_Identity=25, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=391, Percent_Identity=24.2966751918159, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=31.588785046729, Blast_Score=282, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24642252, Length=524, Percent_Identity=31.2977099236641, Blast_Score=264, Evalue=2e-70,
Organism=Drosophila melanogaster, GI18859989, Length=524, Percent_Identity=31.2977099236641, Blast_Score=264, Evalue=2e-70,
Organism=Drosophila melanogaster, GI24641342, Length=554, Percent_Identity=30.6859205776173, Blast_Score=260, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59863; Mature: 59863

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLDNISKQNGHQILFIEASMSIQKGEKVGLVGPNGAGKTTLFRMITGQEQPDDGVVAI
CCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHEEEEECCCCCCCCCEEEE
DPGLTIGYFSQDVGEMSGQSAVAAVMDGVGPVSALAAEMARLEAAMVDPAMMEPGRADEL
CCCCEEEHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHH
DAVIQRYGEVQGRFEELDGYALEARAREVLAGLSFSQERMDGDVGLLSGGWKMRVALARI
HHHHHHHHHHCCHHHHCCCEEHHHHHHHHHHCCCCCHHHCCCCEEEECCCHHHHHHHHHH
LLMRPDGMLLDEPSNHLDLESLIWLESFLKGYDGALLMTSHDRAFMNRIVGKVVEIDAGQ
HHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHEEECCCC
LITYSGDLDFYDQQRALGEQQRQAQYERQQAMLAKEIKFIERFKARASHAAQVQSRVKKL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKIERVEPPRRRQQVQFEFRSPPRSGDDVISLKGVHKGYGDRPIYEGLDFLVRRKERWCV
HHHHHCCCHHHHHCEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
LGANGAGKSTLLKLAAGAVAPDKGTVSIGASVKMGYFAQHSMDLLDGEETIFESLDGAFP
EECCCCCHHHHHHHHHCCCCCCCCCEEECCCEEECHHHHHCHHHHCCHHHHHHHHCCCCC
HAGQGALRTLAGCFGFSGDDVEKPCRVLSGGEKARLIMARMLFDPPNLLVLDEPTNHLDM
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHH
ATKEMLVQALADFEGTMLFVSHDRHFLAALSNRVLELTPEGVHQYGGGYTEYVARTGQEA
HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCHHHHHHCCCHHHHHHHCCCCC
PGLHPGG
CCCCCCC
>Mature Secondary Structure
MIRLDNISKQNGHQILFIEASMSIQKGEKVGLVGPNGAGKTTLFRMITGQEQPDDGVVAI
CCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHEEEEECCCCCCCCCEEEE
DPGLTIGYFSQDVGEMSGQSAVAAVMDGVGPVSALAAEMARLEAAMVDPAMMEPGRADEL
CCCCEEEHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHH
DAVIQRYGEVQGRFEELDGYALEARAREVLAGLSFSQERMDGDVGLLSGGWKMRVALARI
HHHHHHHHHHCCHHHHCCCEEHHHHHHHHHHCCCCCHHHCCCCEEEECCCHHHHHHHHHH
LLMRPDGMLLDEPSNHLDLESLIWLESFLKGYDGALLMTSHDRAFMNRIVGKVVEIDAGQ
HHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHEEECCCC
LITYSGDLDFYDQQRALGEQQRQAQYERQQAMLAKEIKFIERFKARASHAAQVQSRVKKL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKIERVEPPRRRQQVQFEFRSPPRSGDDVISLKGVHKGYGDRPIYEGLDFLVRRKERWCV
HHHHHCCCHHHHHCEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
LGANGAGKSTLLKLAAGAVAPDKGTVSIGASVKMGYFAQHSMDLLDGEETIFESLDGAFP
EECCCCCHHHHHHHHHCCCCCCCCCEEECCCEEECHHHHHCHHHHCCHHHHHHHHCCCCC
HAGQGALRTLAGCFGFSGDDVEKPCRVLSGGEKARLIMARMLFDPPNLLVLDEPTNHLDM
CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHH
ATKEMLVQALADFEGTMLFVSHDRHFLAALSNRVLELTPEGVHQYGGGYTEYVARTGQEA
HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCHHHHHHCCCHHHHHHHCCCCC
PGLHPGG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]