| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104118
Identifier: 197104118
GI number: 197104118
Start: 702258
End: 704843
Strand: Direct
Name: 197104118
Synonym: PHZ_c0652
Alternate gene names: NA
Gene position: 702258-704843 (Clockwise)
Preceding gene: 197104117
Following gene: 197104119
Centisome position: 17.57
GC content: 68.68
Gene sequence:
>2586_bases ATGACCAAGCTCCACCGCCCGCTCGCCGGGCTGCTGCTCTGCACCACCGCGCTGATGGCGCCCGGCCTGGTCCAGGCCCA GACCTCCGGCCAGGAGGTCGAGGAGATCGTGGTCCGGGGCAAGTACATCCCCGAGGTCATGCGCGAGACCTCCGAGGTGG CCTCGATCGTCACCCCCGAGGACCTGGTCCGGCAGGGCGACGACACGGCGGCCGCGGCCCTGACGCGCCTCGCCGGCCTG AGCGTCGTAAGCGGCCGGTTCGTCTACGTGCGGGGCCTCGGCGAGCGCTACTCCTCGGCCCTGCTGAACGGCTCGCCGCT GCCCAGCCCCGAGCCGCTGCAGCGGGTCGTCCCGCTGGACCTCTTCCCGTCGAACGTGCTGGCGGGCGTCAACGTCCAGA AGACCTATTCCCCGAACCTGCCGGGCGAGTTCGGCGGCGGCCTGATCGACCTTCGCACCATCGACACGCCCGACGATCCG TTCGTCTCCCTGGGCTTCAGCGTCGGGATGAACGACGAGACCACGCTGAAGCGCGGGCTCACCTACTACGGCGGCGACAG CGACCGGCTGGGGATCGACGACGGCACGCGCGAGCTGCCCGCCGCCATCCGCCGCGGCATCGAGACCGGAAAGCGGATCG ACGCGGCCAACTTCGGCTCGGACGAGCTGACGCGGATGGGCCGCAGCTTCCAGAACGCCAACATCAACCTGCTGCAGTCG ACCAACGACGTGCCCTTCAACGGCAGCGTCGACTTCGCCGCCGGCACGTCCTTCGCCATGGACTGGGGCACGCTGGGCGT GGTGACGGTGCTGGGCTACGACTCCGGCTGGTCCACCCGCGACGCCATCCAGCAGGAGGGCGTGGTCAACCTGGACGGCC TGGCGGTGCAGGAGGACCTGCGCTCGTTCTCGACCCAGAACGACGTCGTCATCAACGGCCTGACCAGCGTCGCGCTGGAG CTCGACCACCACACCTTCAAGTGGACCAACTTCTACGTCCGCAACGTGACCAAGGAGACCCGCTCGGTCGAAGGCGAGAG CGCCCGGGCCTCGAACTACATCCGCGACGACTGGACGAGCTGGTACCAGCGCGAGCTGATCGACACCCAGCTGACCGGCG CGCACCGCTTCGGCGACCTGGAGATCGACTGGCGCGGCTCGTACGCCCGCACCGAGCGCGAGGTGCCCTACGAGCGACAG GTCCGCTATCGCCGGGTGGACGACGTGTTCCTGCACAACCCGCAGTCCGACGCCAACTTCATCCGGTTCAGCGAGCTGGA GGACAAGGCCGCCGGCGCCGGGGTGGACGTGCGCTACCGCCTGGCGAACGACTACGTCGCCGACCTGACCCTCTCGGCGG GCTACGCGTGGTACGACAACGAGCGGTTCTCGGACAGCCGGGCCTTCCGGTTCACGATGAACTCGACGCCCTCCGTCGCC TTCCAGATGCAGCGCGTCGACTTCCTCTACTCGGACTTCAACATCGGCCCCGACGGGCTGATCCTGCGCGAGGTGACAGG CTCGGACGGCGCGGCCGCCTACGAGGCCAGCCTCACGACCCATGCCGGCTACGTGCAGGCCGAGGGCGAGATCTTCCCGG CGGTCCGCGCCACGGTCGGCGCCCGCTACGAGAGCGGCAAGCAGTTCGTCCGCGCGATCGACCTCTTCGCGACGACGCAG GACGCGGGGCACGAGCTGGAGAACGACTACCTGCTGCCCGCCGCGACGGTGACCTGGAACTTCGCCGAGGACCAGCAGCT GCGCTTCGGCGCCTCGAAGACCATCGCCCGGCCGCAGTTCCGCGAGCAGGCGCCGCAGCTCTACCTCGACCCCGAGTCGG ACCGCACCTTCATCGGCAACCCGTTCCTTGAGGACAGCGAGCTGATCAACCTGGACGCCCGCTACGAGCGCTACTTCGAC CGCGGCCAGTTCGCGACGGCGGGGGTCTTCTACAAACAGATCGACCGGCCGATCGAATCCGTCGTGAACGAGTCCGGCTC GGGCCTGCAGCAGAGCTTCCTGAACGCGCCGGAGGCGGTGCTCTACGGCTTCGAGGCCGAGTTCAAGAAGTTCTTCGAGC CGCAGATCGACATCGCGGGCCTGGCCGGCCTGCGCTGGCTGGTGTCGGCCAACTACACCTACACCAAGGCCGAGGTGAAG GTGGACGAGGGCGACGTGGTCTATCCGCGGACCAATCTCGGCCAGCCCGCGCCCGCGGCCAACTTCGTGATCGACGGCAG CCCGCTGCAGGGCCAGTCCAAGCACCTGGCCAACGTGCAGGTCGGCTTCGAGACCGAGGACGGCATGACCCAGGCGACCC TGCTCGCCAATTACGCCAGCAAGCGGGTCACCGCCCGCGGCCAGGCGGGCGCGCCGGACTTCGTGCAGGAGCCGGGCGTG ATGCTCGACTTCACCTTCCGCCACCGCTTCGAGCTGTGGGCGCAGGAGTTCACCTTCGGCGTCGAGGCGCGCAACCTGCT GGGCGAGGAGTTCGACGAATACCAGAAGCGCAACGGCGACGAGATCAAGCTCAACAACTACGAGCTGGGCCGCAGCGTCT CGGTGAGCCTCTCGGCCCGCTTCTGA
Upstream 100 bases:
>100_bases ACCTGCGGCCTGGCCGCCGGCAGCAGCTGCTGATCACGCGGGGCGGGGCCTCGCGGCCCCGCCTCCTCCGCGTCCGACGA ACTCCAGAGGCGATCCTGAC
Downstream 100 bases:
>100_bases AGGTGAGCGCGGGCGGTTGCGGCGCCTCGCCGCGGCCGCCCGGGCGACCCCGAGGCGCGCTGTCACCTTAGCTTCATCCA AGCGTCACGGGAACGTCGGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB-Dependent Outer Membrane Receptor Protein; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 861; Mature: 860
Protein sequence:
>861_residues MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGL SVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDP FVSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALE LDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQ VRYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQ DAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFD RGQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGV MLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF
Sequences:
>Translated_861_residues MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGL SVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDP FVSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALE LDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQ VRYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQ DAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFD RGQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGV MLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF >Mature_860_residues TKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPEDLVRQGDDTAAAALTRLAGLS VVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLDLFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPF VSLGFSVGMNDETTLKRGLTYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQST NDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDLRSFSTQNDVVINGLTSVALEL DHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTSWYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQV RYRRVDDVFLHNPQSDANFIRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVAF QMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVGARYESGKQFVRAIDLFATTQD AGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQFREQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDR GQFATAGVFYKQIDRPIESVVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVKV DEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYASKRVTARGQAGAPDFVQEPGVM LDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGDEIKLNNYELGRSVSVSLSARF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95583; Mature: 95452
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPE CCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH DLVRQGDDTAAAALTRLAGLSVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLD HHHHCCCCHHHHHHHHHHCCCEECCCEEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCCC LFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPFVSLGFSVGMNDETTLKRGL CCCCHHEECCEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHHCC TYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDL CCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH RSFSTQNDVVINGLTSVALELDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTS HHHCCCCCEEEECCEEEEEEECCCEEEEEEEEEEHHHHHHHCCCCCCHHHCCCHHHHHHH WYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQVRYRRVDDVFLHNPQSDANF HHHHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHCHHEEECCCCCCCE IRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA EEEHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEECCCCCCCCCEEEEEECCCCCCE FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVG EEEHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHC ARYESGKQFVRAIDLFATTQDAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQF CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCHH REQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDRGQFATAGVFYKQIDRPIES HHHCCCEEECCCCCCEEECCCCCCCCCEEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHH VVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK HHCCCCCCHHHHHCCCCCCEEECCHHHHHHHCCCCCCCHHHHHEEEEEECCCEEEEEEEE VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYAS ECCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH KRVTARGQAGAPDFVQEPGVMLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGD HHEEECCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC EIKLNNYELGRSVSVSLSARF EEEECCEECCCEEEEEEEECC >Mature Secondary Structure TKLHRPLAGLLLCTTALMAPGLVQAQTSGQEVEEIVVRGKYIPEVMRETSEVASIVTPE CCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH DLVRQGDDTAAAALTRLAGLSVVSGRFVYVRGLGERYSSALLNGSPLPSPEPLQRVVPLD HHHHCCCCHHHHHHHHHHCCCEECCCEEEEEECCHHHHHHHCCCCCCCCCCHHHHCCCCC LFPSNVLAGVNVQKTYSPNLPGEFGGGLIDLRTIDTPDDPFVSLGFSVGMNDETTLKRGL CCCCHHEECCEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHHCC TYYGGDSDRLGIDDGTRELPAAIRRGIETGKRIDAANFGSDELTRMGRSFQNANINLLQS EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC TNDVPFNGSVDFAAGTSFAMDWGTLGVVTVLGYDSGWSTRDAIQQEGVVNLDGLAVQEDL CCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH RSFSTQNDVVINGLTSVALELDHHTFKWTNFYVRNVTKETRSVEGESARASNYIRDDWTS HHHCCCCCEEEECCEEEEEEECCCEEEEEEEEEEHHHHHHHCCCCCCHHHCCCHHHHHHH WYQRELIDTQLTGAHRFGDLEIDWRGSYARTEREVPYERQVRYRRVDDVFLHNPQSDANF HHHHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCCCHHHHHHHHHHCHHEEECCCCCCCE IRFSELEDKAAGAGVDVRYRLANDYVADLTLSAGYAWYDNERFSDSRAFRFTMNSTPSVA EEEHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEECCCCCCCCCEEEEEECCCCCCE FQMQRVDFLYSDFNIGPDGLILREVTGSDGAAAYEASLTTHAGYVQAEGEIFPAVRATVG EEEHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHC ARYESGKQFVRAIDLFATTQDAGHELENDYLLPAATVTWNFAEDQQLRFGASKTIARPQF CCHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCHH REQAPQLYLDPESDRTFIGNPFLEDSELINLDARYERYFDRGQFATAGVFYKQIDRPIES HHHCCCEEECCCCCCEEECCCCCCCCCEEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHH VVNESGSGLQQSFLNAPEAVLYGFEAEFKKFFEPQIDIAGLAGLRWLVSANYTYTKAEVK HHCCCCCCHHHHHCCCCCCEEECCHHHHHHHCCCCCCCHHHHHEEEEEECCCEEEEEEEE VDEGDVVYPRTNLGQPAPAANFVIDGSPLQGQSKHLANVQVGFETEDGMTQATLLANYAS ECCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH KRVTARGQAGAPDFVQEPGVMLDFTFRHRFELWAQEFTFGVEARNLLGEEFDEYQKRNGD HHEEECCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC EIKLNNYELGRSVSVSLSARF EEEECCEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA