Click here to switch to the map view.

The map label for this gene is dcrA [H]

Identifier: 197103911

GI number: 197103911

Start: 450204

End: 451358

Strand: Direct

Name: dcrA [H]

Synonym: PHZ_c0445

Alternate gene names: 197103911

Gene position: 450204-451358 (Clockwise)

Preceding gene: 197103910

Following gene: 197103913

Centisome position: 11.27

GC content: 72.47

Gene sequence:

>1155_bases
ATGACGAGTACATCTTCAGCCGCTGACGCGCCCAGCTGCGCGGCCTGCTTCGAAGCCATCGGCCGGGTGCTGCAGCAGGC
GGCGAGGGGCGACCTGGAGGGCCGGGTCTCACCCCTGCCCGAGGACGCGGAGGCGAGGGAGGTGGCCGAGGCGCTGAACG
CGCTCCTCGACCTGACGGACGCCTATGTGCGCGAGAGCCGCGCGGCGCTCCAGCACGTGGCCGAGGGTGTGTATTACCGA
CGGGTGATGGAGCAGGGCCTGCTGGGCTCGTTCGGCCAGGCCGCCGGCGTGATCAACCAGGCGATGAAGGCGATGGGCGA
CAAGGTCGCCGGCGTCGAGGCCCTAAGGGGCAGCCTCCTGCAGATCGCCGACGAGGTGGCCTCGTCCGCGGGCGCGGTGG
AGACGTCGGCCCAGGGGCTGGCCGAGCTGGTCGGCCGGGTGCGCCAGAGCGCGGCGGCGATCGACGGCAGCGCCCGCAAC
ACCAACGAGAACGTCTCGGGCGTGGTGGCCGCGACCGAGCAGCTGAGCGCCTCGATCAGCGGCGTGGGCTCGCTGGCGGG
CTCGACCTCGCAGGTCTCGCGCGACGTGGTGGACCGCGCCCGGACGACGGCCCAGGCGATGGTCGAGCTGCAGGACGCGT
CCGAGCAGATCAACGCCGTGGTGGCGCTGATCCGGGAAGTGGCCAGCCAGACGAACCTACTGTCGCTGAACGCCATGATC
GAGGCGACCCGCGCGGGCGACGCCGGACGCGGCTTCGCGGTGGTCGCCGGCGAGGTGAAGGCCCTGGCGCGGCAGACGGG
CGAGGCGACGGTCGATATCACCCACCAGATCCAGTCGGTGCAGGAACTGACGCGGCAGGCCAGCGCCGCCATCTCGGGCG
TGCAGCCCATCGTCGATCAGCTCGCCAGCATGGCCGAGCAGGTCTCGGTGGCCGTGGAGCAGCAGAGCGAGGCCACCCAG
GAGATCTCGGGCCACATCCACCAGGCGGCGGAAGGGGCCCGGGAGGTGGCCGGCGAGATCGGCGAGATCACCGAGGCGAT
CGGCGGCGCCGATCAGGCCGCCCAGGAGATGTTCGCCGCCGCCCAGATGGTCGCCGGCCAGGCGACGCGGCTGCGCGCCG
AACTCGACGGCTACCTGGGCGGATCCGCCCCCTAG

Upstream 100 bases:

>100_bases
GAGATGCGGCGGGTGGAAGACGCGGCGGGCGGCAAGGCTTCGGCGGCGGAGAGCTCGGTGGCGGCGCTCACCAACCTGCT
GGCGGAACGCGGGGTGACCT

Downstream 100 bases:

>100_bases
GGCGCCCGGGCCACGCCCTCGCGGCGGGGATCGGCGCCGCCGCGCAGGCCCTGGGGCGTGACCTCGACGCCGTGCAGGCC
CGAGCCCTCGGCGCCGGGGC

Product: methyl accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTSTSSAADAPSCAACFEAIGRVLQQAARGDLEGRVSPLPEDAEAREVAEALNALLDLTDAYVRESRAALQHVAEGVYYR
RVMEQGLLGSFGQAAGVINQAMKAMGDKVAGVEALRGSLLQIADEVASSAGAVETSAQGLAELVGRVRQSAAAIDGSARN
TNENVSGVVAATEQLSASISGVGSLAGSTSQVSRDVVDRARTTAQAMVELQDASEQINAVVALIREVASQTNLLSLNAMI
EATRAGDAGRGFAVVAGEVKALARQTGEATVDITHQIQSVQELTRQASAAISGVQPIVDQLASMAEQVSVAVEQQSEATQ
EISGHIHQAAEGAREVAGEIGEITEAIGGADQAAQEMFAAAQMVAGQATRLRAELDGYLGGSAP

Sequences:

>Translated_384_residues
MTSTSSAADAPSCAACFEAIGRVLQQAARGDLEGRVSPLPEDAEAREVAEALNALLDLTDAYVRESRAALQHVAEGVYYR
RVMEQGLLGSFGQAAGVINQAMKAMGDKVAGVEALRGSLLQIADEVASSAGAVETSAQGLAELVGRVRQSAAAIDGSARN
TNENVSGVVAATEQLSASISGVGSLAGSTSQVSRDVVDRARTTAQAMVELQDASEQINAVVALIREVASQTNLLSLNAMI
EATRAGDAGRGFAVVAGEVKALARQTGEATVDITHQIQSVQELTRQASAAISGVQPIVDQLASMAEQVSVAVEQQSEATQ
EISGHIHQAAEGAREVAGEIGEITEAIGGADQAAQEMFAAAQMVAGQATRLRAELDGYLGGSAP
>Mature_383_residues
TSTSSAADAPSCAACFEAIGRVLQQAARGDLEGRVSPLPEDAEAREVAEALNALLDLTDAYVRESRAALQHVAEGVYYRR
VMEQGLLGSFGQAAGVINQAMKAMGDKVAGVEALRGSLLQIADEVASSAGAVETSAQGLAELVGRVRQSAAAIDGSARNT
NENVSGVVAATEQLSASISGVGSLAGSTSQVSRDVVDRARTTAQAMVELQDASEQINAVVALIREVASQTNLLSLNAMIE
ATRAGDAGRGFAVVAGEVKALARQTGEATVDITHQIQSVQELTRQASAAISGVQPIVDQLASMAEQVSVAVEQQSEATQE
ISGHIHQAAEGAREVAGEIGEITEAIGGADQAAQEMFAAAQMVAGQATRLRAELDGYLGGSAP

Specific function: Signal Transducer For Aerotaxis. The Aerotactic Response Is The Accumulation Of Cells Around Air Bubbles. The Nature Of The Sensory Stimulus Detected By This Protein Is The Proton Motive Force Or Cellular Redox State. It Uses A FAD Prosthetic Group As A R

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=217, Percent_Identity=31.7972350230415, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788195, Length=181, Percent_Identity=34.8066298342541, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI2367378, Length=188, Percent_Identity=32.4468085106383, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788194, Length=240, Percent_Identity=32.0833333333333, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787690, Length=259, Percent_Identity=30.1158301158301, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 39339; Mature: 39208

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTSSAADAPSCAACFEAIGRVLQQAARGDLEGRVSPLPEDAEAREVAEALNALLDLTD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AYVRESRAALQHVAEGVYYRRVMEQGLLGSFGQAAGVINQAMKAMGDKVAGVEALRGSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
QIADEVASSAGAVETSAQGLAELVGRVRQSAAAIDGSARNTNENVSGVVAATEQLSASIS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GVGSLAGSTSQVSRDVVDRARTTAQAMVELQDASEQINAVVALIREVASQTNLLSLNAMI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EATRAGDAGRGFAVVAGEVKALARQTGEATVDITHQIQSVQELTRQASAAISGVQPIVDQ
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASMAEQVSVAVEQQSEATQEISGHIHQAAEGAREVAGEIGEITEAIGGADQAAQEMFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AQMVAGQATRLRAELDGYLGGSAP
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSTSSAADAPSCAACFEAIGRVLQQAARGDLEGRVSPLPEDAEAREVAEALNALLDLTD
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AYVRESRAALQHVAEGVYYRRVMEQGLLGSFGQAAGVINQAMKAMGDKVAGVEALRGSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
QIADEVASSAGAVETSAQGLAELVGRVRQSAAAIDGSARNTNENVSGVVAATEQLSASIS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GVGSLAGSTSQVSRDVVDRARTTAQAMVELQDASEQINAVVALIREVASQTNLLSLNAMI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EATRAGDAGRGFAVVAGEVKALARQTGEATVDITHQIQSVQELTRQASAAISGVQPIVDQ
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASMAEQVSVAVEQQSEATQEISGHIHQAAEGAREVAGEIGEITEAIGGADQAAQEMFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AQMVAGQATRLRAELDGYLGGSAP
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]