| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is pcbC [H]
Identifier: 197103783
GI number: 197103783
Start: 309644
End: 310597
Strand: Reverse
Name: pcbC [H]
Synonym: PHZ_c0317
Alternate gene names: 197103783
Gene position: 310597-309644 (Counterclockwise)
Preceding gene: 197103788
Following gene: 197103778
Centisome position: 7.77
GC content: 69.6
Gene sequence:
>954_bases ATGAGCCAAGCCGCCGCCCTGCCCGAGACCATCGAGCCCGTCTCCTACGCCCTGTTCGACCAGGATTTCGAGGCCTTCAC CCGCAAGCTGGGCGACAGCTTCCGGCGCTGGGGCTTCGCGGTGATCTGCGACCACGGCCTGCCGCAGGAGAAGGTCGACG CCGCGATCGGCGAGACCAAGGCCTTCTTCGCCCTGCCGGAGGAGACCAAGCTGAAGTACAAGCTGCCGGTGGCCGGCCAG CGCGGCTACACCCCCTTCGGCGTCGAGACCGCGAAGGGCCACCAGCACTACGACCTGAAGGAGTTCTGGCACGTCGGCCG CGACCTGCCGCCCGGCCACCGGTTCCGCAGCCACATGCCCGACAACGTCTGGCCCGACGCCGAGCTGCCGCAGTTCCGCC AGCGCGTGGGCTGGCTGTACGGCGCGCTCGACGCGATGGGGCTGAAGGTGCTGGAGGCGATCGCGACCTACGTCGGCCTC GAGCGGCGGTTCTTCGAGCCGACGGTGGACTTCGGCAACTCGATCCTGCGGCTGCTGCACTATCCGCCGGTGCCCAAGGA CGGGCCGCACATCCGGGCCGGCGCCCACGAGGACATCAACGTCATCACCCTGCTGCTGGGCGCCGAGGAGGCGGGGCTGG AGGTGAAGGACCACGACGGCCGCTGGATCCCGATCAACCCGCCGCCGGGCGCCCTCGTCATCAACATCGGCGACATGCTG CAGCGGCTGACCAACCACCGCCTGCCGTCCACGACCCACCGGGTGGTCAACCCGGCGCCCGAGCGCCGTGGCTTTCCGCG CTACTCGACGCCGTTCTTCCTGCACTTCAACTCGGACTACCTGATCCGCACCCTGCCCGGCTGCGTCGACGCCGCCCACC CGGACCGCTACCCCGAACCGATCACGGCCGACGACTACCTCCAGGAACGCCTGCGCGAGATCAAGCTGGCGTAG
Upstream 100 bases:
>100_bases ATGTGGCGGCTAACGCCCCCGGGAGGCAACACGCGAGCGGGCGAAGGGCTGATCGCCGCGCCCGCTGGAGGCGCGCGGCG GCCGGGTGTAGAGGAGGGCC
Downstream 100 bases:
>100_bases CTGTTCCTTCTCCCCTTGCGGGAGAAGGCGGCCGGCGGAGCCGGTCGGATGAGGGGTTTCCCGGGCCCCCGACAAATGAC GAAGGGGCCGCGCCCGCGGT
Product: oxidoreductase iron/ascorbate family
Products: NA
Alternate protein names: IPNS [H]
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSQAAALPETIEPVSYALFDQDFEAFTRKLGDSFRRWGFAVICDHGLPQEKVDAAIGETKAFFALPEETKLKYKLPVAGQ RGYTPFGVETAKGHQHYDLKEFWHVGRDLPPGHRFRSHMPDNVWPDAELPQFRQRVGWLYGALDAMGLKVLEAIATYVGL ERRFFEPTVDFGNSILRLLHYPPVPKDGPHIRAGAHEDINVITLLLGAEEAGLEVKDHDGRWIPINPPPGALVINIGDML QRLTNHRLPSTTHRVVNPAPERRGFPRYSTPFFLHFNSDYLIRTLPGCVDAAHPDRYPEPITADDYLQERLREIKLA
Sequences:
>Translated_317_residues MSQAAALPETIEPVSYALFDQDFEAFTRKLGDSFRRWGFAVICDHGLPQEKVDAAIGETKAFFALPEETKLKYKLPVAGQ RGYTPFGVETAKGHQHYDLKEFWHVGRDLPPGHRFRSHMPDNVWPDAELPQFRQRVGWLYGALDAMGLKVLEAIATYVGL ERRFFEPTVDFGNSILRLLHYPPVPKDGPHIRAGAHEDINVITLLLGAEEAGLEVKDHDGRWIPINPPPGALVINIGDML QRLTNHRLPSTTHRVVNPAPERRGFPRYSTPFFLHFNSDYLIRTLPGCVDAAHPDRYPEPITADDYLQERLREIKLA >Mature_316_residues SQAAALPETIEPVSYALFDQDFEAFTRKLGDSFRRWGFAVICDHGLPQEKVDAAIGETKAFFALPEETKLKYKLPVAGQR GYTPFGVETAKGHQHYDLKEFWHVGRDLPPGHRFRSHMPDNVWPDAELPQFRQRVGWLYGALDAMGLKVLEAIATYVGLE RRFFEPTVDFGNSILRLLHYPPVPKDGPHIRAGAHEDINVITLLLGAEEAGLEVKDHDGRWIPINPPPGALVINIGDMLQ RLTNHRLPSTTHRVVNPAPERRGFPRYSTPFFLHFNSDYLIRTLPGCVDAAHPDRYPEPITADDYLQERLREIKLA
Specific function: Removes, in the presence of oxygen, 4 hydrogen atoms from delta-L-(alpha-aminoadipyl)-L-cysteinyl-D-valine (ACV) to form the azetidinone and thiazolidine rings of isopenicillin [H]
COG id: COG3491
COG function: function code R; Isopenicillin N synthase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe2OG dioxygenase domain [H]
Homologues:
Organism=Drosophila melanogaster, GI28572124, Length=269, Percent_Identity=28.996282527881, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI85816264, Length=281, Percent_Identity=28.1138790035587, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002057 - InterPro: IPR002283 - InterPro: IPR005123 [H]
Pfam domain/function: PF03171 2OG-FeII_Oxy [H]
EC number: =1.21.3.1 [H]
Molecular weight: Translated: 35946; Mature: 35815
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQAAALPETIEPVSYALFDQDFEAFTRKLGDSFRRWGFAVICDHGLPQEKVDAAIGETK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCC AFFALPEETKLKYKLPVAGQRGYTPFGVETAKGHQHYDLKEFWHVGRDLPPGHRFRSHMP EEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC DNVWPDAELPQFRQRVGWLYGALDAMGLKVLEAIATYVGLERRFFEPTVDFGNSILRLLH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH YPPVPKDGPHIRAGAHEDINVITLLLGAEEAGLEVKDHDGRWIPINPPPGALVINIGDML CCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCEEECCCCCEEECCCCCCEEEEEHHHHH QRLTNHRLPSTTHRVVNPAPERRGFPRYSTPFFLHFNSDYLIRTLPGCVDAAHPDRYPEP HHHHHCCCCCCHHHHCCCCHHHCCCCCCCCCEEEEECCCCHHHHCCCHHCCCCCCCCCCC ITADDYLQERLREIKLA CCHHHHHHHHHHHHCCC >Mature Secondary Structure SQAAALPETIEPVSYALFDQDFEAFTRKLGDSFRRWGFAVICDHGLPQEKVDAAIGETK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCC AFFALPEETKLKYKLPVAGQRGYTPFGVETAKGHQHYDLKEFWHVGRDLPPGHRFRSHMP EEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC DNVWPDAELPQFRQRVGWLYGALDAMGLKVLEAIATYVGLERRFFEPTVDFGNSILRLLH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH YPPVPKDGPHIRAGAHEDINVITLLLGAEEAGLEVKDHDGRWIPINPPPGALVINIGDML CCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCEEECCCCCEEECCCCCCEEEEEHHHHH QRLTNHRLPSTTHRVVNPAPERRGFPRYSTPFFLHFNSDYLIRTLPGCVDAAHPDRYPEP HHHHHCCCCCCHHHHCCCCHHHCCCCCCCCCEEEEECCCCHHHHCCCHHCCCCCCCCCCC ITADDYLQERLREIKLA CCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1956290 [H]