Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 197103778

GI number: 197103778

Start: 304354

End: 305565

Strand: Reverse

Name: yfdE [H]

Synonym: PHZ_c0312

Alternate gene names: 197103778

Gene position: 305565-304354 (Counterclockwise)

Preceding gene: 197103783

Following gene: 197103776

Centisome position: 7.65

GC content: 72.28

Gene sequence:

>1212_bases
ATGAGCGAAACCGAAGCCGCGCGCGGTCCGCTGGCCGGGCTGGTGGTGATCGAAATGGGGACCCTGATCGCCGGTCCCTT
CTGCGGGCAGATCCTGGGCGACTTCGGCGCCGAGGTGATCAAGATCGAGGACCCGCGCAAGGGCGACCCCATGCGCCAGT
GGGGCCGCAGCCTGCCCAAGGGCCTGTCCCCCTGGTGGCCGGTGATCGGGCGCAACAAGAAGTCGGTCGGCCTCGACCTG
CGCACCCCCGAGGGGCAGGAGATCGCCCGCGCCCTGATCGCCGGCGCCGACGTGGTGGTGGAGAACTTCCGCCCCGGCGC
GATGGAGAAGTGGGGGCTGTCGTACGAGGCCCTGTCGGCGCAGAACCCCCGGCTGATCATGGCCCGGGTCTCTGGGTTCG
GGCAGACCGGCCCCTACGCCCAGCGCGCCGGCTACGGCCTGATCGGCGAGGCCATGGGCGGCCTGCGCTACGTCACCGGC
GAGCCCGACCGTCCGCCGGCCCGCGTCGGAATCTCCATCGGCGATTCCCTGGCGGCCATGCACGCGGCCATGGGCGTCCT
GATGGCGCTGCACCACCGCGATCGCACCGGACGCGGTCAGGTGATCGACGCGGCCCTCTACGAGAGCGTCCTGGCCGTCA
TGGAGAACCTGGTCACCGAATACGACCTGACGGGCTATGTGCGCGAGCGGTCCGGCTCGGTCCTGCCCGGCATCGCCCCG
TCGAACGCCTACCCCTGCGCGGGCGGCGAGCTGATCCTGATCGGCGGCAACGGCGACACCGTCTTCGCCCGCCTGACCGA
GGCCATGGGCCGGCCCGACCTGAGGACCGATCCGCGGTTCGCGGACCACGCCGGCCGCGGAAAACATCAGGCCGAGCTGG
ACGCCATCATCGCCGAGTGGACCGGCGGCCAGGCCCTGCCCGACCTGCTGGCCTTGCTGGAGGAGAAGGGCGTGCCGGCC
AGCCGCATGTTCCGCGCCCCCGACATGCTGGAGGACCCGCAGTACCGCGCCCGCGAGGCCATCGTGGAGACGCCCCACCC
GGTGTTCGGCCAGGTGAAGATGCAGAACGTGTTCCCGAAGCTGTCGGACACCCCCGGGCGGGTGCGCTGGCCGGGGCCCG
AGCTGGGCCAGCACACCGACGAGGTGCTGGCGGAGCGGGCCGGCTGCACGGCCGAGCGGCTGGCCGAGCTGCGCCGCAAG
GGCGTGGTCTGA

Upstream 100 bases:

>100_bases
AACTCGGCCATGGCCGCGCATTTAGGCCCCCCGCGCGGCGAAGGGAACCCTACGTAAGGTTAGTCTCGCGCAGGGCCTCC
GGCGGCGGTATGGCGGAACC

Downstream 100 bases:

>100_bases
AAGCGCGAACGGCCCGCGACTGAGCCGCGGACCGCACGTGGGGTCGGGTCGCTTGTTTCCGGGCGATGTCCCGTGGCCGC
CGGTCCGGCCCCTGCGACAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSETEAARGPLAGLVVIEMGTLIAGPFCGQILGDFGAEVIKIEDPRKGDPMRQWGRSLPKGLSPWWPVIGRNKKSVGLDL
RTPEGQEIARALIAGADVVVENFRPGAMEKWGLSYEALSAQNPRLIMARVSGFGQTGPYAQRAGYGLIGEAMGGLRYVTG
EPDRPPARVGISIGDSLAAMHAAMGVLMALHHRDRTGRGQVIDAALYESVLAVMENLVTEYDLTGYVRERSGSVLPGIAP
SNAYPCAGGELILIGGNGDTVFARLTEAMGRPDLRTDPRFADHAGRGKHQAELDAIIAEWTGGQALPDLLALLEEKGVPA
SRMFRAPDMLEDPQYRAREAIVETPHPVFGQVKMQNVFPKLSDTPGRVRWPGPELGQHTDEVLAERAGCTAERLAELRRK
GVV

Sequences:

>Translated_403_residues
MSETEAARGPLAGLVVIEMGTLIAGPFCGQILGDFGAEVIKIEDPRKGDPMRQWGRSLPKGLSPWWPVIGRNKKSVGLDL
RTPEGQEIARALIAGADVVVENFRPGAMEKWGLSYEALSAQNPRLIMARVSGFGQTGPYAQRAGYGLIGEAMGGLRYVTG
EPDRPPARVGISIGDSLAAMHAAMGVLMALHHRDRTGRGQVIDAALYESVLAVMENLVTEYDLTGYVRERSGSVLPGIAP
SNAYPCAGGELILIGGNGDTVFARLTEAMGRPDLRTDPRFADHAGRGKHQAELDAIIAEWTGGQALPDLLALLEEKGVPA
SRMFRAPDMLEDPQYRAREAIVETPHPVFGQVKMQNVFPKLSDTPGRVRWPGPELGQHTDEVLAERAGCTAERLAELRRK
GVV
>Mature_402_residues
SETEAARGPLAGLVVIEMGTLIAGPFCGQILGDFGAEVIKIEDPRKGDPMRQWGRSLPKGLSPWWPVIGRNKKSVGLDLR
TPEGQEIARALIAGADVVVENFRPGAMEKWGLSYEALSAQNPRLIMARVSGFGQTGPYAQRAGYGLIGEAMGGLRYVTGE
PDRPPARVGISIGDSLAAMHAAMGVLMALHHRDRTGRGQVIDAALYESVLAVMENLVTEYDLTGYVRERSGSVLPGIAPS
NAYPCAGGELILIGGNGDTVFARLTEAMGRPDLRTDPRFADHAGRGKHQAELDAIIAEWTGGQALPDLLALLEEKGVPAS
RMFRAPDMLEDPQYRAREAIVETPHPVFGQVKMQNVFPKLSDTPGRVRWPGPELGQHTDEVLAERAGCTAERLAELRRKG
VV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=30.9644670050761, Blast_Score=214, Evalue=9e-56,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=29.0476190476191, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=27.9187817258883, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=25.7142857142857, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=30.0492610837438, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI42794625, Length=406, Percent_Identity=30.0492610837438, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=34.6007604562738, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=35.8870967741936, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=40.1360544217687, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=40.1360544217687, Blast_Score=103, Evalue=4e-22,
Organism=Escherichia coli, GI87082093, Length=343, Percent_Identity=37.0262390670554, Blast_Score=224, Evalue=5e-60,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=29.4964028776978, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=28.7128712871287, Blast_Score=139, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI115535051, Length=281, Percent_Identity=29.8932384341637, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=216, Percent_Identity=30.5555555555556, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=33.1658291457286, Blast_Score=231, Evalue=9e-61,
Organism=Drosophila melanogaster, GI24585488, Length=298, Percent_Identity=33.2214765100671, Blast_Score=144, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43412; Mature: 43281

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETEAARGPLAGLVVIEMGTLIAGPFCGQILGDFGAEVIKIEDPRKGDPMRQWGRSLPK
CCCCCCCCCCCCEEHEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCC
GLSPWWPVIGRNKKSVGLDLRTPEGQEIARALIAGADVVVENFRPGAMEKWGLSYEALSA
CCCCCCHHHCCCCCCCCCEECCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHCCCHHHHCC
QNPRLIMARVSGFGQTGPYAQRAGYGLIGEAMGGLRYVTGEPDRPPARVGISIGDSLAAM
CCCEEEEEEECCCCCCCCHHHHCCCCHHHHHHCCEEEECCCCCCCCCEEEEECCHHHHHH
HAAMGVLMALHHRDRTGRGQVIDAALYESVLAVMENLVTEYDLTGYVRERSGSVLPGIAP
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCC
SNAYPCAGGELILIGGNGDTVFARLTEAMGRPDLRTDPRFADHAGRGKHQAELDAIIAEW
CCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHC
TGGQALPDLLALLEEKGVPASRMFRAPDMLEDPQYRAREAIVETPHPVFGQVKMQNVFPK
CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHCCC
LSDTPGRVRWPGPELGQHTDEVLAERAGCTAERLAELRRKGVV
CCCCCCCEECCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SETEAARGPLAGLVVIEMGTLIAGPFCGQILGDFGAEVIKIEDPRKGDPMRQWGRSLPK
CCCCCCCCCCCEEHEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCC
GLSPWWPVIGRNKKSVGLDLRTPEGQEIARALIAGADVVVENFRPGAMEKWGLSYEALSA
CCCCCCHHHCCCCCCCCCEECCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHCCCHHHHCC
QNPRLIMARVSGFGQTGPYAQRAGYGLIGEAMGGLRYVTGEPDRPPARVGISIGDSLAAM
CCCEEEEEEECCCCCCCCHHHHCCCCHHHHHHCCEEEECCCCCCCCCEEEEECCHHHHHH
HAAMGVLMALHHRDRTGRGQVIDAALYESVLAVMENLVTEYDLTGYVRERSGSVLPGIAP
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCC
SNAYPCAGGELILIGGNGDTVFARLTEAMGRPDLRTDPRFADHAGRGKHQAELDAIIAEW
CCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHC
TGGQALPDLLALLEEKGVPASRMFRAPDMLEDPQYRAREAIVETPHPVFGQVKMQNVFPK
CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHCCC
LSDTPGRVRWPGPELGQHTDEVLAERAGCTAERLAELRRKGVV
CCCCCCCEECCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]