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The map label for this gene is yhbH [C]

Identifier: 197103646

GI number: 197103646

Start: 175390

End: 176058

Strand: Direct

Name: yhbH [C]

Synonym: PHZ_c0180

Alternate gene names: 197103646

Gene position: 175390-176058 (Clockwise)

Preceding gene: 197103645

Following gene: 197103647

Centisome position: 4.39

GC content: 66.07

Gene sequence:

>669_bases
TTGACACCTTCTGAGCGGAGGCGCGTTGATCGTCACATGGAAGTCCAAGTCACCGGCAAACACGTCGATGTCGGCGAGGC
TCTGCGTTCGCGAGTCGCCGACGAACTCTCAGCCAGCATCGAGAAGTACTTCGACCGCGGCGGCGGCGCCGACGTCGTGG
TCAGCCGCGAGGGCAACGCCTTCAAGGTGGACTGCGCGGTCACCCTGGCCTCGGGCCAGCAGCTGACCACCCACGGCGTG
GGCGGCGACGCCCACATGGCCTTCGACGTGGCCCTGCAGAAGATGGACAAGCGCATCCGGCGGTATAAGCGCCGGCTGAA
GGACCACTCGCCGCAGGCCGCCGCCAAGCAGGCCGAGAGCGCCGCCTACTTCGTCATCCGCCCGATCGACCTGGAGGAGG
ACGAGGAGGAGGATTCGGGCGAGCCCCAGGGCTTCCCCGAGCCCATGATCATCGCCGAGACCGAGAAGCCGGTGCGGACG
ATGACCGTTTCGATGGCGGTCATGGAGCTCGATCTGACCGAAGCTCAAACAATTGTGTTCCGAAACGCTGCGCACGGCGG
GATCTCGGTGGTATATCGCCGCCCCGACGGAAACATCGGCTGGATCGATCCCGAGCGGACGAAGGGCCGCAACGGGATGG
ACGGGGAGGGAACCGGTCCGGCCCACTAG

Upstream 100 bases:

>100_bases
TCGGCTACGGCGCGGCGCTCGCCAGCGCCTCGGTTCTGGTGCTCGCCGCCAGCATCGTGATCAAGGCTTTCCAGGGCCTG
ATGGCCCTGCTTTCGGCTGC

Downstream 100 bases:

>100_bases
CGCTAACGAACGATCGTCACACGCCCCCGCTAGAGGCGCGGCCGACGGTCAGTAGTGAGTTCAAGACGAAGCATGCACAT
CGGCGACCTTCTCGATCGCA

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTPSERRRVDRHMEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASGQQLTTHGV
GGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQAAAKQAESAAYFVIRPIDLEEDEEEDSGEPQGFPEPMIIAETEKPVRT
MTVSMAVMELDLTEAQTIVFRNAAHGGISVVYRRPDGNIGWIDPERTKGRNGMDGEGTGPAH

Sequences:

>Translated_222_residues
MTPSERRRVDRHMEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASGQQLTTHGV
GGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQAAAKQAESAAYFVIRPIDLEEDEEEDSGEPQGFPEPMIIAETEKPVRT
MTVSMAVMELDLTEAQTIVFRNAAHGGISVVYRRPDGNIGWIDPERTKGRNGMDGEGTGPAH
>Mature_221_residues
TPSERRRVDRHMEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNAFKVDCAVTLASGQQLTTHGVG
GDAHMAFDVALQKMDKRIRRYKRRLKDHSPQAAAKQAESAAYFVIRPIDLEEDEEEDSGEPQGFPEPMIIAETEKPVRTM
TVSMAVMELDLTEAQTIVFRNAAHGGISVVYRRPDGNIGWIDPERTKGRNGMDGEGTGPAH

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 24447; Mature: 24316

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSERRRVDRHMEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNA
CCCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
FKVDCAVTLASGQQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQAAAKQAES
EEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
AAYFVIRPIDLEEDEEEDSGEPQGFPEPMIIAETEKPVRTMTVSMAVMELDLTEAQTIVF
CEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHEEEECCCHHEEEEE
RNAAHGGISVVYRRPDGNIGWIDPERTKGRNGMDGEGTGPAH
ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPSERRRVDRHMEVQVTGKHVDVGEALRSRVADELSASIEKYFDRGGGADVVVSREGNA
CCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
FKVDCAVTLASGQQLTTHGVGGDAHMAFDVALQKMDKRIRRYKRRLKDHSPQAAAKQAES
EEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
AAYFVIRPIDLEEDEEEDSGEPQGFPEPMIIAETEKPVRTMTVSMAVMELDLTEAQTIVF
CEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHEEEECCCHHEEEEE
RNAAHGGISVVYRRPDGNIGWIDPERTKGRNGMDGEGTGPAH
ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]