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The map label for this gene is exoD [H]

Identifier: 197103645

GI number: 197103645

Start: 174773

End: 175393

Strand: Direct

Name: exoD [H]

Synonym: PHZ_c0179

Alternate gene names: 197103645

Gene position: 174773-175393 (Clockwise)

Preceding gene: 197103644

Following gene: 197103646

Centisome position: 4.37

GC content: 71.5

Gene sequence:

>621_bases
ATGCTGCTATCCGATCCGCACCAGCCTCTGTCCGAGGTCCTGCAGGAGATCGCCGAGACGCCCTCGGAGCGGATCTCGCT
GAACGAGCTGTCGGCCAGGTTCGGCGGCCGGGCGCTGGGCGCCCTGCTGCTGGTGTTCGGGATCCTGTGCCTGCTGCCGC
TGCCGCCGGGCGCGACGACCATCTTCGGCCTGCCGCTGCTGCTGCTCGCCCCGCAGCTGCTGGTGGGCCTGCGCGCGCCC
TGGCTGCCGCAGACGCTGCGCCACCGGGCGGTGGAGATGGACCAGGTGCGGCCGAACCTGCCGCGGGTGATCCGCTGGCT
GCGGCGCATCGAATCGGTGTCGCGCCCGCGGCTGACGTTCCTGTTCGGCCCGGTCGGCCAGCGGCTGATCGGCCTCGTCT
GCACGGTTCTGGCGGTGGTGCTGATCCTGCCCATCCCGCTGGGCAACCTGCTGCCGGCGGCCTCGGTCAGCGTGCTGGCC
CTGGCGCTCATCCAGCGGGACGGAATCCTGGCCCTGATCGGCTACGGCGCGGCGCTCGCCAGCGCCTCGGTTCTGGTGCT
CGCCGCCAGCATCGTGATCAAGGCTTTCCAGGGCCTGATGGCCCTGCTTTCGGCTGCTTGA

Upstream 100 bases:

>100_bases
CTCGTCGGTGGAGCGCCGGCGCATGCTGAAGGAAGCCGTCTAGCGCTTCCTGCGTTGAGCCCCTTGGCGCGGCCGTTTGG
GAGCGCCAGATGAGGGGGCG

Downstream 100 bases:

>100_bases
CACCTTCTGAGCGGAGGCGCGTTGATCGTCACATGGAAGTCCAAGTCACCGGCAAACACGTCGATGTCGGCGAGGCTCTG
CGTTCGCGAGTCGCCGACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLLSDPHQPLSEVLQEIAETPSERISLNELSARFGGRALGALLLVFGILCLLPLPPGATTIFGLPLLLLAPQLLVGLRAP
WLPQTLRHRAVEMDQVRPNLPRVIRWLRRIESVSRPRLTFLFGPVGQRLIGLVCTVLAVVLILPIPLGNLLPAASVSVLA
LALIQRDGILALIGYGAALASASVLVLAASIVIKAFQGLMALLSAA

Sequences:

>Translated_206_residues
MLLSDPHQPLSEVLQEIAETPSERISLNELSARFGGRALGALLLVFGILCLLPLPPGATTIFGLPLLLLAPQLLVGLRAP
WLPQTLRHRAVEMDQVRPNLPRVIRWLRRIESVSRPRLTFLFGPVGQRLIGLVCTVLAVVLILPIPLGNLLPAASVSVLA
LALIQRDGILALIGYGAALASASVLVLAASIVIKAFQGLMALLSAA
>Mature_206_residues
MLLSDPHQPLSEVLQEIAETPSERISLNELSARFGGRALGALLLVFGILCLLPLPPGATTIFGLPLLLLAPQLLVGLRAP
WLPQTLRHRAVEMDQVRPNLPRVIRWLRRIESVSRPRLTFLFGPVGQRLIGLVCTVLAVVLILPIPLGNLLPAASVSVLA
LALIQRDGILALIGYGAALASASVLVLAASIVIKAFQGLMALLSAA

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 21938; Mature: 21938

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSDPHQPLSEVLQEIAETPSERISLNELSARFGGRALGALLLVFGILCLLPLPPGATT
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
IFGLPLLLLAPQLLVGLRAPWLPQTLRHRAVEMDQVRPNLPRVIRWLRRIESVSRPRLTF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH
LFGPVGQRLIGLVCTVLAVVLILPIPLGNLLPAASVSVLALALIQRDGILALIGYGAALA
HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SASVLVLAASIVIKAFQGLMALLSAA
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLSDPHQPLSEVLQEIAETPSERISLNELSARFGGRALGALLLVFGILCLLPLPPGATT
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
IFGLPLLLLAPQLLVGLRAPWLPQTLRHRAVEMDQVRPNLPRVIRWLRRIESVSRPRLTF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH
LFGPVGQRLIGLVCTVLAVVLILPIPLGNLLPAASVSVLALALIQRDGILALIGYGAALA
HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SASVLVLAASIVIKAFQGLMALLSAA
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]