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The map label for this gene is sucC

Identifier: 197103624

GI number: 197103624

Start: 146943

End: 148142

Strand: Direct

Name: sucC

Synonym: PHZ_c0158

Alternate gene names: 197103624

Gene position: 146943-148142 (Clockwise)

Preceding gene: 197103623

Following gene: 197103625

Centisome position: 3.68

GC content: 66.83

Gene sequence:

>1200_bases
ATGAACATCCACGAACATCAAGCCAAAGCCGTCCTCGCAGAGTTCGGCGTGGCCGTCCCGCGCGGGTATCCCGCGTTCTC
CGTCGATGAAGCCGTCCAGGCCGCCGAGAAGCTCGGCGGCCCTGTCTTTGTGGTGAAGTCCCAGATCCACGCCGGCGGGC
GCGGCAAGGGCCGGTTCGAGGGCCTGGGCCCCGACGCCAAGGGCGGCGTGCGCGTCGTCAAGTCGGTGGACGAGGTGAAG
GCCAACGCCGAGGAGATGCTGGGCCGGGTGCTCGTGACCCACCAGACCGGCGCGGCCGGCAAGCAGGTGAACCGCCTCTA
CATCGAGGAAGGCGCGCAGATCGCCAAGGAATTCTACCTGTCGCTGCTGGTGGACCGCGAGACGAGCTGGGTCTCGGTCG
TGGCCTCCACCGAGGGCGGCATGGACATCGAGGAAGTGGCGCACGCCACGCCCGAGAAGATCGTCACCTTCTCCATCGAC
CCGGCCACCGGCGTCTTCCCGCACCACGGCCGCCACCTGGCCAAGGCGCTGGGCCTGACCGGCGGCCTCGCCAAGGAAGC
GGCCACGCTGCTGAACCAGCTCTACGCGGCGTTCCTGGCCAAGGACATGTCGATGCTGGAGATCAACCCGCTGATCGTCA
CGGGCGATGATCACCTGCGGGTGCTGGACGCCAAGGTCAGCTTCGACTCCAACGCCCTGTTCCGCCACGCCGACGTCGTC
GCGCTGCGCGACGAGAGCGAGGAGGACCCGAAGGAGATCGAGGCCTCCAAGTACGACCTCAGCTACATCGCCCTGGACGG
CGAGATCGGCTGCATGGTCAACGGCGCGGGCCTGGCCATGGCCACCATGGACATCATCAAGCTCTACGGCGCCGAGCCCG
CCAACTTCCTCGACGTGGGCGGCGGGGCCAGCAAGGAGAAGGTGACGGCCGCCTTCAAGATCATCACCGCGGACCCGAAC
GTGAAGGGCATCCTGGTGAACATCTTTGGCGGCATCATGCGCTGCGACATCATCGCCGAGGGCGTGGTGGCCGCGGTCAA
GGAAGTGGGCCTGAAGGTGCCGCTGGTCGTCCGCCTCGAGGGCACGAACGTCGACCTGGGCAAGAAGATCATCAACGAGA
GCGGCCTGAACGTGATCGCCGCGAACGATCTGTCGGACGGAGCCGAGAAGATCGTGAAGGCCGTCCGGGGGGCTGCGTAA

Upstream 100 bases:

>100_bases
TTCAAGGGGGCCCGCGCGGTTGTCATCGAGGGGCGCGGCGCCTATAAGCCCCGTCACTCGCCGCCCGGGCGAGGTGTCCG
GCAACTGCGCCCAAGGCCTC

Downstream 100 bases:

>100_bases
GAGAATGTCGATCCTTATCGGTAAGGACACCCGCGTCATCTGCCAGGGCATCACCGGCAGCCAGGGCACCTTCCACACCG
AACAGGCCATCGCCTACGGG

Product: succinyl-CoA synthetase subunit beta

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit beta; SCS-beta

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKLGGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVK
ANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSID
PATGVFPHHGRHLAKALGLTGGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHLRVLDAKVSFDSNALFRHADVV
ALRDESEEDPKEIEASKYDLSYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPN
VKGILVNIFGGIMRCDIIAEGVVAAVKEVGLKVPLVVRLEGTNVDLGKKIINESGLNVIAANDLSDGAEKIVKAVRGAA

Sequences:

>Translated_399_residues
MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKLGGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVK
ANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSID
PATGVFPHHGRHLAKALGLTGGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHLRVLDAKVSFDSNALFRHADVV
ALRDESEEDPKEIEASKYDLSYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPN
VKGILVNIFGGIMRCDIIAEGVVAAVKEVGLKVPLVVRLEGTNVDLGKKIINESGLNVIAANDLSDGAEKIVKAVRGAA
>Mature_399_residues
MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKLGGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVK
ANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSID
PATGVFPHHGRHLAKALGLTGGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHLRVLDAKVSFDSNALFRHADVV
ALRDESEEDPKEIEASKYDLSYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPN
VKGILVNIFGGIMRCDIIAEGVVAAVKEVGLKVPLVVRLEGTNVDLGKKIINESGLNVIAANDLSDGAEKIVKAVRGAA

Specific function: Tricarboxylic acid cycle. [C]

COG id: COG0045

COG function: function code C; Succinyl-CoA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain

Homologues:

Organism=Homo sapiens, GI11321583, Length=394, Percent_Identity=46.9543147208122, Blast_Score=365, Evalue=1e-101,
Organism=Homo sapiens, GI157779135, Length=387, Percent_Identity=48.062015503876, Blast_Score=350, Evalue=1e-96,
Organism=Homo sapiens, GI294862256, Length=363, Percent_Identity=47.9338842975207, Blast_Score=329, Evalue=3e-90,
Organism=Escherichia coli, GI1786948, Length=397, Percent_Identity=52.896725440806, Blast_Score=408, Evalue=1e-115,
Organism=Caenorhabditis elegans, GI17539378, Length=395, Percent_Identity=46.5822784810127, Blast_Score=350, Evalue=6e-97,
Organism=Caenorhabditis elegans, GI17567829, Length=393, Percent_Identity=45.5470737913486, Blast_Score=341, Evalue=3e-94,
Organism=Saccharomyces cerevisiae, GI6321683, Length=396, Percent_Identity=45.4545454545455, Blast_Score=363, Evalue=1e-101,
Organism=Drosophila melanogaster, GI161078106, Length=403, Percent_Identity=48.3870967741936, Blast_Score=358, Evalue=3e-99,
Organism=Drosophila melanogaster, GI24645208, Length=403, Percent_Identity=48.3870967741936, Blast_Score=358, Evalue=3e-99,
Organism=Drosophila melanogaster, GI281361397, Length=407, Percent_Identity=48.1572481572482, Blast_Score=355, Evalue=3e-98,
Organism=Drosophila melanogaster, GI281361395, Length=407, Percent_Identity=48.1572481572482, Blast_Score=355, Evalue=3e-98,
Organism=Drosophila melanogaster, GI21356231, Length=396, Percent_Identity=46.969696969697, Blast_Score=345, Evalue=3e-95,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2361 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SUCC_PHEZH (B4RCH3)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002129001.1
- GeneID:   6789646
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c0158
- HOGENOM:   HBG315432
- OMA:   NPLIVMK
- ProtClustDB:   PRK00696
- HAMAP:   MF_00558
- InterPro:   IPR011761
- InterPro:   IPR013650
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR005811
- InterPro:   IPR017866
- InterPro:   IPR005809
- InterPro:   IPR016102
- Gene3D:   G3DSA:3.30.1490.20
- Gene3D:   G3DSA:3.30.470.20
- Gene3D:   G3DSA:3.40.50.261
- PANTHER:   PTHR11815
- TIGRFAMs:   TIGR01016

Pfam domain/function: PF08442 ATP-grasp_2; PF00549 Ligase_CoA; SSF52210 CoA_ligase

EC number: =6.2.1.5

Molecular weight: Translated: 42115; Mature: 42115

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50975 ATP_GRASP; PS01217 SUCCINYL_COA_LIG_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKLGGPVFVVKSQIHAGGRGKGRFE
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
GLGPDAKGGVRVVKSVDEVKANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYL
CCCCCCCCCHHHHHHHHHHHCCHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
SLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSIDPATGVFPHHGRHLAKALGLT
HHHCCCCCCEEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCC
GGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHLRVLDAKVSFDSNALFRHADVV
CCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCEEEEEEEECCCCCCCEEECEEE
ALRDESEEDPKEIEASKYDLSYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVG
EECCCCCCCHHHHCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECC
GGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDIIAEGVVAAVKEVGLKVPLVVRLE
CCCCCHHEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
GTNVDLGKKIINESGLNVIAANDLSDGAEKIVKAVRGAA
CCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKLGGPVFVVKSQIHAGGRGKGRFE
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
GLGPDAKGGVRVVKSVDEVKANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYL
CCCCCCCCCHHHHHHHHHHHCCHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
SLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSIDPATGVFPHHGRHLAKALGLT
HHHCCCCCCEEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCC
GGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHLRVLDAKVSFDSNALFRHADVV
CCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCEEEEEEEECCCCCCCEEECEEE
ALRDESEEDPKEIEASKYDLSYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVG
EECCCCCCCHHHHCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECC
GGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDIIAEGVVAAVKEVGLKVPLVVRLE
CCCCCHHEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
GTNVDLGKKIINESGLNVIAANDLSDGAEKIVKAVRGAA
CCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA