| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is dcp [H]
Identifier: 197103586
GI number: 197103586
Start: 109448
End: 111604
Strand: Reverse
Name: dcp [H]
Synonym: PHZ_c0120
Alternate gene names: 197103586
Gene position: 111604-109448 (Counterclockwise)
Preceding gene: 197103588
Following gene: 197103583
Centisome position: 2.79
GC content: 69.36
Gene sequence:
>2157_bases ATGCGCCGTCGCACCTTCCTCGCCGCCACCTCGGCCCTCGCCGCCACCTCGGCCCTCGCCGCCGCCGCCGCCCTGCCCGC CGCCGTCCTGGCCCAGGACCTTCCCAAGGACTTGGCCGCCAACCCGGCCGCGGCCCCGTGGACTGGGCCCTTCGGCGGCG TGCCCGCCTTCGACAAGGTGCGGCTGGAGCACTTCCGTCCCGCGCTGGAGGCCGGCATGGCGCAGGAGTGGGCCGAGGTG GAGGCGATCGCGAACGATCCCGCCCCGCCCACCTTCGACAACACCATCGAGGCCCTGGAGCGTAGCGGCTCTGCCCTCGA CCGCGTCCAGACGATCTACGGCGTCTGGGTGGCGACCCTGTCCACGCCCGAGCTGCGCGCGCTCGACAAGGAGATGCAGC CGAAGCTCGCGGCCCATAGCGACCGCATCCTGCAGAACGAGAAGCTCTTCCAGCGCATCGACGCGGTCTACCGCCAGCGC GAGAGCCTGAAGCTCACCCCCGAGCAGGACCGGCTGCTGTGGCTGCGCTGGAACACCTTCGTCCGCAACGGCGCCCAGCT CGCCCCCGAGGCCAAGGCCAGGGTCGCGGCGATCAACGCCGAGTTGGCCACGGCCTTCACCGCCTTCAGCCAGAACCTGC TGCACGACGAGAACGAGTACGACCTCTACCTGAAGGAGGCCGACCTCGCCGGCCTGCCCGCCGACGTGCGCGCGGCCATG GCCGCGGCGGCCAAGGCCAAGGGCCGCGACGGCGAGTACGTGATCGTCAACACGCGCTCGTCGGTGGACCCGTTCCTCAC CTACGCCGAGCGCCGCGACCTGCGCGAGAAGGTCTGGCGCACCTACTACAGCCGCGGCGACAACGGCGGAGCTCACGACA ACAACGGCCTGATCCGCCAGATCCTGAAGCTGCGCGCCGAGCGGGCGAAGCTGTTCGGCTATCCGACCCACGCCCACTGG CGGCTGGCCAACAACTCCATGGCCGAGACCCCGCAGGCCGCCAGCGAGCTGATGGAGCGGGTGTGGCCCTTCGCCGTCGC CCGCGTGAAGGAGGAGGTGGCCGAGATGCAGGCCATCGCCGACAAGGAAGGCGCCGGGATCAAGATCGAGCCCTGGGACT ACCGGTTCTACGCCGAGAAGGTCCGCAAGGCCCGCTACGACCTCGATATGAACGAGGTGAAGCCTTACCTGCAGCTCGAG AAGCTGCGCGAGGGCATGTTCTGGGCCGCCGGCCAGCTCTACGGCTTCACGTTCCATCCGGTGACGAACGTGCCCGTGCA GCATCCGGACGTCCGCGTCTGGGAGGTGAAGCGCGGGGCCGAGCACATCGGCCTGTGGTACTTCGATCCCTACGCCCGGA CCGGCAAGCGCTCGGGCGCCTGGATGAACGCCTACCGGGCGCAGGAGACCTTCGACGGCAAGGTCACCACCATCGTCTCG AACAACTCGAACTTCGTGAAGGGCGCCCCCGGCGAGGCGGTGCTGATCTCGTGGGACGACGCCGAGACCATGTTCCACGA GTTCGGCCACGCCCTGCACGGCCTCAACTCGGCGGTGACCTATCCCTCCGTGTCGGGCACCCGGGTGTTCCGCGACTACG TGGAGTTCCCCTCGACGGTGAACGAGTCCTGGCTGCGCACGCCCCAGGTGCTGAACCGGTTCGCCCTGCATCATCAGACC GGCAAGCCGATCCCGCCCGAGCTGGTCGCCAAGATCGAGAACGCCTCGACCTTCCGCCAGGGCTTCGACGTCACCGAATT CCTCGCCTCGGCGCTGATCGACATGAAGCTGCACCTGGCCGGCGACGCCGACATCGATCCCGACGCCTTCGAGCGCGAGG AGCTGGCGAAACTCGGCATGCCCGCCGAGCTGCCGATGCGCCACCGCACGCCGCAGTTCGGGCACATCTTCGCGTCCGAC GGCTATTCGGCCGGCTACTACTCGTACCTGTGGGCCGAGGTGATCGCGCTGGACGCCGTCGAGGCGTTCCGCGAGGCGCC GGGCGGCCTCTACGACAAGGGCGTCGCCAAGCGGCTGCACGACCACGTCATGAGCGTCGGCAACTCGGTCCACCCGCGCG AGGGCTACCGCGCCTTCCGCGGCCGCGACCCCGACGTGAAGGCCTACCTGAAGGACAAGGGCTTCCCGACGAGCTGA
Upstream 100 bases:
>100_bases CCCGCGGGAAAACCGGCGTCATATCAAGGCCCTGTCACGTGACGTTCAGCTCCGATCCTGCTTAAGGTCGCAGGCAATGA GCCGTCCGACCGGAGATTCC
Downstream 100 bases:
>100_bases CCCTCAGGCGAACAGGTCGCCCTGGGGAGTCTCCTTCGGGATGGCCGCCTTCGCGCCCTCGATGGCGAGCAGCCTCAGCT TGGTGTCCACCCCGCCGCGG
Product: peptidyl-dipeptidase DCP
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MRRRTFLAATSALAATSALAAAAALPAAVLAQDLPKDLAANPAAAPWTGPFGGVPAFDKVRLEHFRPALEAGMAQEWAEV EAIANDPAPPTFDNTIEALERSGSALDRVQTIYGVWVATLSTPELRALDKEMQPKLAAHSDRILQNEKLFQRIDAVYRQR ESLKLTPEQDRLLWLRWNTFVRNGAQLAPEAKARVAAINAELATAFTAFSQNLLHDENEYDLYLKEADLAGLPADVRAAM AAAAKAKGRDGEYVIVNTRSSVDPFLTYAERRDLREKVWRTYYSRGDNGGAHDNNGLIRQILKLRAERAKLFGYPTHAHW RLANNSMAETPQAASELMERVWPFAVARVKEEVAEMQAIADKEGAGIKIEPWDYRFYAEKVRKARYDLDMNEVKPYLQLE KLREGMFWAAGQLYGFTFHPVTNVPVQHPDVRVWEVKRGAEHIGLWYFDPYARTGKRSGAWMNAYRAQETFDGKVTTIVS NNSNFVKGAPGEAVLISWDDAETMFHEFGHALHGLNSAVTYPSVSGTRVFRDYVEFPSTVNESWLRTPQVLNRFALHHQT GKPIPPELVAKIENASTFRQGFDVTEFLASALIDMKLHLAGDADIDPDAFEREELAKLGMPAELPMRHRTPQFGHIFASD GYSAGYYSYLWAEVIALDAVEAFREAPGGLYDKGVAKRLHDHVMSVGNSVHPREGYRAFRGRDPDVKAYLKDKGFPTS
Sequences:
>Translated_718_residues MRRRTFLAATSALAATSALAAAAALPAAVLAQDLPKDLAANPAAAPWTGPFGGVPAFDKVRLEHFRPALEAGMAQEWAEV EAIANDPAPPTFDNTIEALERSGSALDRVQTIYGVWVATLSTPELRALDKEMQPKLAAHSDRILQNEKLFQRIDAVYRQR ESLKLTPEQDRLLWLRWNTFVRNGAQLAPEAKARVAAINAELATAFTAFSQNLLHDENEYDLYLKEADLAGLPADVRAAM AAAAKAKGRDGEYVIVNTRSSVDPFLTYAERRDLREKVWRTYYSRGDNGGAHDNNGLIRQILKLRAERAKLFGYPTHAHW RLANNSMAETPQAASELMERVWPFAVARVKEEVAEMQAIADKEGAGIKIEPWDYRFYAEKVRKARYDLDMNEVKPYLQLE KLREGMFWAAGQLYGFTFHPVTNVPVQHPDVRVWEVKRGAEHIGLWYFDPYARTGKRSGAWMNAYRAQETFDGKVTTIVS NNSNFVKGAPGEAVLISWDDAETMFHEFGHALHGLNSAVTYPSVSGTRVFRDYVEFPSTVNESWLRTPQVLNRFALHHQT GKPIPPELVAKIENASTFRQGFDVTEFLASALIDMKLHLAGDADIDPDAFEREELAKLGMPAELPMRHRTPQFGHIFASD GYSAGYYSYLWAEVIALDAVEAFREAPGGLYDKGVAKRLHDHVMSVGNSVHPREGYRAFRGRDPDVKAYLKDKGFPTS >Mature_718_residues MRRRTFLAATSALAATSALAAAAALPAAVLAQDLPKDLAANPAAAPWTGPFGGVPAFDKVRLEHFRPALEAGMAQEWAEV EAIANDPAPPTFDNTIEALERSGSALDRVQTIYGVWVATLSTPELRALDKEMQPKLAAHSDRILQNEKLFQRIDAVYRQR ESLKLTPEQDRLLWLRWNTFVRNGAQLAPEAKARVAAINAELATAFTAFSQNLLHDENEYDLYLKEADLAGLPADVRAAM AAAAKAKGRDGEYVIVNTRSSVDPFLTYAERRDLREKVWRTYYSRGDNGGAHDNNGLIRQILKLRAERAKLFGYPTHAHW RLANNSMAETPQAASELMERVWPFAVARVKEEVAEMQAIADKEGAGIKIEPWDYRFYAEKVRKARYDLDMNEVKPYLQLE KLREGMFWAAGQLYGFTFHPVTNVPVQHPDVRVWEVKRGAEHIGLWYFDPYARTGKRSGAWMNAYRAQETFDGKVTTIVS NNSNFVKGAPGEAVLISWDDAETMFHEFGHALHGLNSAVTYPSVSGTRVFRDYVEFPSTVNESWLRTPQVLNRFALHHQT GKPIPPELVAKIENASTFRQGFDVTEFLASALIDMKLHLAGDADIDPDAFEREELAKLGMPAELPMRHRTPQFGHIFASD GYSAGYYSYLWAEVIALDAVEAFREAPGGLYDKGVAKRLHDHVMSVGNSVHPREGYRAFRGRDPDVKAYLKDKGFPTS
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=635, Percent_Identity=28.9763779527559, Blast_Score=228, Evalue=2e-59, Organism=Homo sapiens, GI14149738, Length=639, Percent_Identity=25.1956181533646, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI156105687, Length=648, Percent_Identity=22.5308641975309, Blast_Score=129, Evalue=1e-29, Organism=Escherichia coli, GI1787819, Length=682, Percent_Identity=39.7360703812317, Blast_Score=465, Evalue=1e-132, Organism=Escherichia coli, GI1789913, Length=685, Percent_Identity=31.970802919708, Blast_Score=300, Evalue=3e-82, Organism=Caenorhabditis elegans, GI32565901, Length=568, Percent_Identity=22.7112676056338, Blast_Score=84, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71999758, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6319793, Length=615, Percent_Identity=25.5284552845528, Blast_Score=153, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6322715, Length=522, Percent_Identity=20.6896551724138, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21356111, Length=491, Percent_Identity=25.6619144602851, Blast_Score=142, Evalue=7e-34, Organism=Drosophila melanogaster, GI20129717, Length=415, Percent_Identity=25.7831325301205, Blast_Score=101, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 80352; Mature: 80352
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRTFLAATSALAATSALAAAAALPAAVLAQDLPKDLAANPAAAPWTGPFGGVPAFDKV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHH RLEHFRPALEAGMAQEWAEVEAIANDPAPPTFDNTIEALERSGSALDRVQTIYGVWVATL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC STPELRALDKEMQPKLAAHSDRILQNEKLFQRIDAVYRQRESLKLTPEQDRLLWLRWNTF CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHH VRNGAQLAPEAKARVAAINAELATAFTAFSQNLLHDENEYDLYLKEADLAGLPADVRAAM HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH AAAAKAKGRDGEYVIVNTRSSVDPFLTYAERRDLREKVWRTYYSRGDNGGAHDNNGLIRQ HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH ILKLRAERAKLFGYPTHAHWRLANNSMAETPQAASELMERVWPFAVARVKEEVAEMQAIA HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKEGAGIKIEPWDYRFYAEKVRKARYDLDMNEVKPYLQLEKLREGMFWAAGQLYGFTFHP CCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEECCCEEEEEECC VTNVPVQHPDVRVWEVKRGAEHIGLWYFDPYARTGKRSGAWMNAYRAQETFDGKVTTIVS CCCCCCCCCCCEEEEECCCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHCCCCEEEEEEE NNSNFVKGAPGEAVLISWDDAETMFHEFGHALHGLNSAVTYPSVSGTRVFRDYVEFPSTV CCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC NESWLRTPQVLNRFALHHQTGKPIPPELVAKIENASTFRQGFDVTEFLASALIDMKLHLA CHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEC GDADIDPDAFEREELAKLGMPAELPMRHRTPQFGHIFASDGYSAGYYSYLWAEVIALDAV CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH EAFREAPGGLYDKGVAKRLHDHVMSVGNSVHPREGYRAFRGRDPDVKAYLKDKGFPTS HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHEECCCCCCC >Mature Secondary Structure MRRRTFLAATSALAATSALAAAAALPAAVLAQDLPKDLAANPAAAPWTGPFGGVPAFDKV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHH RLEHFRPALEAGMAQEWAEVEAIANDPAPPTFDNTIEALERSGSALDRVQTIYGVWVATL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC STPELRALDKEMQPKLAAHSDRILQNEKLFQRIDAVYRQRESLKLTPEQDRLLWLRWNTF CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHH VRNGAQLAPEAKARVAAINAELATAFTAFSQNLLHDENEYDLYLKEADLAGLPADVRAAM HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH AAAAKAKGRDGEYVIVNTRSSVDPFLTYAERRDLREKVWRTYYSRGDNGGAHDNNGLIRQ HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH ILKLRAERAKLFGYPTHAHWRLANNSMAETPQAASELMERVWPFAVARVKEEVAEMQAIA HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKEGAGIKIEPWDYRFYAEKVRKARYDLDMNEVKPYLQLEKLREGMFWAAGQLYGFTFHP CCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEECCCEEEEEECC VTNVPVQHPDVRVWEVKRGAEHIGLWYFDPYARTGKRSGAWMNAYRAQETFDGKVTTIVS CCCCCCCCCCCEEEEECCCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHCCCCEEEEEEE NNSNFVKGAPGEAVLISWDDAETMFHEFGHALHGLNSAVTYPSVSGTRVFRDYVEFPSTV CCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC NESWLRTPQVLNRFALHHQTGKPIPPELVAKIENASTFRQGFDVTEFLASALIDMKLHLA CHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEC GDADIDPDAFEREELAKLGMPAELPMRHRTPQFGHIFASDGYSAGYYSYLWAEVIALDAV CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH EAFREAPGGLYDKGVAKRLHDHVMSVGNSVHPREGYRAFRGRDPDVKAYLKDKGFPTS HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]